Variant report

Variant	rs4687644
Chromosome Location	chr3:52746541-52746542
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 231 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:229)

rs_ID	r²[population]
rs1014969	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1029871	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10433615	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10510760	0.89[ASN][1000 genomes]
rs10780035	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10865973	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10865974	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10933	0.84[ASN][1000 genomes]
rs11130307	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11130308	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11130310	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11130311	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11130312	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11130313	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11130314	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11130315	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11130317	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11130318	0.83[EUR][1000 genomes]
rs11130319	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11130321	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11130323	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11130324	0.87[ASN][1000 genomes]
rs11130325	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11130326	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11130327	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11177	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11235	0.93[ASN][1000 genomes]
rs11708075	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11709448	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11714030	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11714088	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11714419	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11714565	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11716747	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11717043	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11717836	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11718420	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11718509	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11719514	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11720159	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11720243	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11720432	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12486554	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12486847	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12487445	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12487591	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12488461	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12488527	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12493107	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12496476	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12496634	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12497998	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12498066	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12629699	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12629701	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12632265	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12632381	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12635140	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13059862	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs13060048	0.82[EUR][1000 genomes]
rs13060675	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13061253	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13061423	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13063160	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs13064064	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13065019	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13065851	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13068293	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13069481	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13071584	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13074853	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13076193	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13078422	0.86[EUR][1000 genomes]
rs13079063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13081031	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13081155	0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs13082208	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13082960	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13083798	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs13085331	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13085775	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13085895	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13086297	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13086898	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13087772	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13094778	0.83[AMR][1000 genomes]
rs13095332	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13098776	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1468638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1561337	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1570	0.81[EUR][1000 genomes]
rs17052256	0.82[EUR][1000 genomes]
rs17052259	0.82[EUR][1000 genomes]
rs17264436	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1821879	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1866268	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2028216	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2072390	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2079929	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2083180	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2109634	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2118540	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2159644	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2164884	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2164885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2230534	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2230535	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2268024	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2268025	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2268026	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2268027	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2276824	0.83[ASN][1000 genomes]
rs2286800	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2289247	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2289250	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2336145	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2336146	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2336148	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2336149	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2336542	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2336545	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2577831	0.83[ASN][1000 genomes]
rs2590838	0.81[ASN][1000 genomes]
rs2590846	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2878628	0.81[EUR][1000 genomes]
rs2878726	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs33967311	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34017441	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34115864	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34157897	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34168767	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34173654	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34215106	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34291015	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34341238	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34537256	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34610142	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34610878	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34739010	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34754793	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34757451	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34918356	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34954168	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35107891	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35211965	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35212380	0.87[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs35249778	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35315313	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35409678	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35526119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35976524	0.92[ASN][1000 genomes]
rs3733039	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3733041	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3733045	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3755798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3755806	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3774349	0.93[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs3774365	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3774366	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3796353	0.82[EUR][1000 genomes]
rs3852066	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4130905	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4336110	0.85[EUR][1000 genomes]
rs4435633	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4687546	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4687547	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4687548	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4687549	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4687629	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4687630	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4687633	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4687636	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4687637	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4687638	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4687639	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4687648	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4687650	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62253700	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62253703	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62253733	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62255362	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62255364	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62255371	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62255396	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6414569	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6414570	0.83[AMR][1000 genomes]
rs6445529	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6445531	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6445534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6445535	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67539070	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6762457	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6762813	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6768697	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6770463	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6786043	0.83[EUR][1000 genomes]
rs6786919	0.83[EUR][1000 genomes]
rs6787154	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6788887	0.84[EUR][1000 genomes]
rs6788993	0.84[EUR][1000 genomes]
rs6790330	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6796726	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs68021750	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6803012	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6804145	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6805156	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6976	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7611731	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7612511	0.81[ASN][1000 genomes]
rs7614498	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7620039	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7622694	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7623199	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7624716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7625743	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7628578	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7638162	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7642198	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7646741	0.93[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7652191	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7653028	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs767418	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8906	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9714129	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9758945	0.84[EUR][1000 genomes]
rs9879090	0.82[ASN][1000 genomes]
rs9917834	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs998909	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv984563	chr3:52516115-52867075	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv508219	chr3:52741193-52803899	Enhancers Flanking Active TSS Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs4687644	NT5DC2	Cis_1M	lymphoblastoid	RTeQTL
rs4687644	MUSTN1	cis	Artery Aorta	GTEx
rs4687644	GLT8D1	Cis_1M	lymphoblastoid	RTeQTL
rs4687644	PBRM1	cis	Artery Tibial	GTEx
rs4687644	NT5DC2	cis	Skin Sun Exposed Lower leg	GTEx
rs4687644	PBRM1	cis	Thyroid	GTEx

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52741000-52748200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:52741000-52748200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:52741000-52748800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:52741000-52748800	Weak transcription	Lung	lung
5	chr3:52741200-52748200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:52741400-52746600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr3:52741400-52747000	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr3:52741400-52765600	Weak transcription	Aorta	Aorta
9	chr3:52741400-52766600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr3:52741600-52746600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr3:52741600-52747000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:52741600-52747000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:52741600-52748000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr3:52741600-52748200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:52741600-52748200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr3:52741600-52748400	Weak transcription	Colonic Mucosa	Colon
17	chr3:52741600-52748400	Weak transcription	Right Ventricle	heart
18	chr3:52741600-52748600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr3:52741600-52748600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr3:52741600-52752600	Weak transcription	Ovary	ovary
21	chr3:52741600-52752600	Weak transcription	A549	lung
22	chr3:52741600-52764000	Weak transcription	Small Intestine	intestine
23	chr3:52741600-52765600	Weak transcription	Esophagus	oesophagus
24	chr3:52741600-52804000	Weak transcription	Psoas Muscle	Psoas
25	chr3:52741800-52746800	Strong transcription	Fetal Muscle Trunk	muscle
26	chr3:52741800-52747400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr3:52741800-52748400	Weak transcription	Fetal Heart	heart
28	chr3:52742000-52748600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr3:52742000-52754200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr3:52742000-52765600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr3:52742000-52766400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr3:52742000-52766400	Weak transcription	NHLF	lung
33	chr3:52742000-52766600	Weak transcription	Hela-S3	cervix
34	chr3:52742000-52766600	Weak transcription	NHEK	skin
35	chr3:52742200-52748600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr3:52742200-52748800	Weak transcription	Stomach Mucosa	stomach
37	chr3:52742200-52767200	Weak transcription	Fetal Brain Male	brain
38	chr3:52742200-52768800	Weak transcription	Colon Smooth Muscle	Colon
39	chr3:52742400-52748000	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr3:52742400-52752600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr3:52742400-52754000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr3:52742400-52754000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr3:52742400-52754400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr3:52742400-52764200	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr3:52742400-52771400	Weak transcription	K562	blood
46	chr3:52742400-52772800	Weak transcription	Pancreas	Pancrea
47	chr3:52742600-52766000	Weak transcription	HUVEC	blood vessel
48	chr3:52742800-52748000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr3:52742800-52752600	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr3:52743000-52746600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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