Variant report

Variant	rs4687636
Chromosome Location	chr3:52633929-52633930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 247 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:246)

rs_ID	r²[population]
rs1014969	0.86[TSI][hapmap]
rs1029871	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10433615	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10510760	0.99[ASN][1000 genomes]
rs10780035	0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10865973	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10865974	0.86[TSI][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10933	0.84[ASN][1000 genomes]
rs11130307	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11130308	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11130310	0.86[TSI][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11130311	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11130312	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11130313	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11130314	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11130315	0.91[TSI][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11130317	0.91[TSI][hapmap];0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11130318	0.86[EUR][1000 genomes]
rs11130319	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11130321	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11130323	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11130325	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11130326	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11130327	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11177	0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11235	0.84[ASN][1000 genomes]
rs1133415	0.86[TSI][hapmap];0.83[ASN][1000 genomes]
rs11708075	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11709448	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11714030	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11714088	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11714419	0.93[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11714565	0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11716747	0.88[TSI][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11717043	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11717836	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11718420	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11718509	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11719514	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11720159	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11720243	0.86[TSI][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11720432	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12486554	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12486847	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12487445	0.93[TSI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12487591	0.91[TSI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12488461	0.89[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12488527	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12489732	0.82[ASN][1000 genomes]
rs12493107	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12496476	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12496634	0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12497998	0.86[TSI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12498066	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12629699	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12629701	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12632265	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12632381	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12635140	0.86[TSI][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13059862	0.85[ASN][1000 genomes]
rs13060048	0.85[ASN][1000 genomes]
rs13060675	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13061253	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13061423	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13063160	0.83[TSI][hapmap];0.85[ASN][1000 genomes]
rs13064064	0.91[TSI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13065019	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13065851	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13068293	0.91[TSI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13069481	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13071584	0.86[TSI][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13074853	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13076193	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13076398	0.83[ASN][1000 genomes]
rs13078422	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13079063	0.86[TSI][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13081031	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13081155	0.84[ASN][1000 genomes]
rs13082208	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13082960	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13083798	0.92[ASN][1000 genomes]
rs13085331	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13085775	0.83[TSI][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13085895	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13086297	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13086898	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13087772	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13095332	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13098776	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13621	0.81[ASN][1000 genomes]
rs1468638	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1561337	0.91[TSI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1570	0.84[ASN][1000 genomes]
rs17052256	0.86[TSI][hapmap];0.84[ASN][1000 genomes]
rs17052259	0.84[ASN][1000 genomes]
rs17264436	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1821879	0.83[ASN][1000 genomes]
rs1866268	0.86[TSI][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1961958	0.93[TSI][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1961959	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2028216	0.93[TSI][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2072390	0.86[TSI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2079929	0.86[TSI][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2083180	0.82[TSI][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2109634	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2118540	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2159644	0.86[TSI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2164884	0.93[TSI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2164885	0.86[TSI][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2230534	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2230535	0.91[TSI][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2239549	0.82[TSI][hapmap]
rs2239551	0.82[TSI][hapmap]
rs2251219	0.91[TSI][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2268024	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2268025	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2268026	0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2268027	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2276824	0.91[ASN][1000 genomes]
rs2286800	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2289247	0.86[TSI][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2289249	0.93[TSI][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2289250	0.91[TSI][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2300149	0.82[TSI][hapmap]
rs2336145	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2336146	0.86[TSI][hapmap];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2336148	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2336149	0.86[TSI][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2336542	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2336545	0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2577831	0.91[ASN][1000 genomes]
rs2590838	0.90[ASN][1000 genomes]
rs2590846	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2878628	0.86[TSI][hapmap];0.84[ASN][1000 genomes]
rs2878726	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs33964154	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs33967311	0.91[TSI][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34005367	0.81[ASN][1000 genomes]
rs34017441	0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34115864	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34157897	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34168767	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34173654	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34215106	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34291015	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34341238	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34537256	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34610142	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34610878	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34739010	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34754793	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34757451	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34918356	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34954168	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35107891	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35211965	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35212380	0.85[ASN][1000 genomes]
rs35249778	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35315313	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35409678	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35526119	0.86[TSI][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35976524	0.97[ASN][1000 genomes]
rs3733039	0.86[TSI][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3733041	0.86[TSI][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3733045	0.86[TSI][hapmap];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3755798	0.86[TSI][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3755806	0.91[TSI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3774349	0.85[ASN][1000 genomes]
rs3774365	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3774366	0.86[TSI][hapmap];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3796353	0.86[TSI][hapmap];0.84[ASN][1000 genomes]
rs3852066	0.86[TSI][hapmap];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4130905	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4336110	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4435633	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4475032	0.91[TSI][hapmap];0.81[ASN][1000 genomes]
rs4687546	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4687547	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4687548	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4687549	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4687625	0.81[ASN][1000 genomes]
rs4687626	0.91[TSI][hapmap];0.82[ASN][1000 genomes]
rs4687629	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4687630	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4687633	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4687637	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4687638	0.93[TSI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4687639	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4687644	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4687648	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4687650	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62253700	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62253703	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62253733	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62255362	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62255364	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62255371	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62255396	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62256903	0.83[ASN][1000 genomes]
rs6414569	0.84[ASN][1000 genomes]
rs6445528	0.84[TSI][hapmap];0.83[ASN][1000 genomes]
rs6445529	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6445531	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6445534	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6445535	0.86[TSI][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6617	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67539070	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6762457	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6762813	0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6768697	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6770463	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6778844	0.93[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6786043	0.86[TSI][hapmap];0.82[ASN][1000 genomes]
rs6786919	0.86[TSI][hapmap];0.85[ASN][1000 genomes]
rs6787154	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6788887	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6788993	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6790330	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6796726	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6798246	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs68021750	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6803012	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6804145	0.86[TSI][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6805156	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6976	0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7611731	0.86[TSI][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7612511	0.87[ASN][1000 genomes]
rs7614498	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7620039	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7622694	0.86[TSI][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7623199	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7624716	0.86[TSI][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7625743	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7628578	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7638162	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7638808	0.84[TSI][hapmap];0.83[ASN][1000 genomes]
rs7642198	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7652191	0.86[TSI][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7653028	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs767418	0.86[TSI][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8906	0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9714129	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9758945	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9879090	0.91[ASN][1000 genomes]
rs9917834	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs998909	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv984563	chr3:52516115-52867075	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs4687636	PBRM1	cis	Thyroid	GTEx
rs4687636	NT5DC2	Cis_1M	lymphoblastoid	RTeQTL
rs4687636	GLT8D1	Cis_1M	lymphoblastoid	RTeQTL
rs4687636	NT5DC2	cis	multi-tissue	Pritchard
rs4687636	NT5DC2	cis	Skin Sun Exposed Lower leg	GTEx
rs4687636	PBRM1	cis	Artery Tibial	GTEx

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52587200-52719200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:52591000-52688000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:52592200-52719200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:52612000-52634800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:52612800-52634800	Weak transcription	A549	lung
6	chr3:52613200-52634000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr3:52613400-52635000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr3:52613400-52635000	Weak transcription	Fetal Brain Male	brain
9	chr3:52613600-52634600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr3:52613600-52635200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:52613600-52635200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:52613600-52635200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr3:52614200-52634800	Weak transcription	Small Intestine	intestine
14	chr3:52620600-52634800	Weak transcription	Aorta	Aorta
15	chr3:52620800-52634800	Weak transcription	Esophagus	oesophagus
16	chr3:52620800-52635000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr3:52620800-52635000	Weak transcription	NHEK	skin
18	chr3:52621600-52635800	Weak transcription	Hela-S3	cervix
19	chr3:52622200-52634200	Weak transcription	HUVEC	blood vessel
20	chr3:52622200-52635000	Weak transcription	Ovary	ovary
21	chr3:52623000-52635200	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr3:52623200-52634200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr3:52623200-52634200	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr3:52623200-52634400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr3:52623200-52634800	Weak transcription	Rectal Smooth Muscle	rectum
26	chr3:52623200-52635400	Weak transcription	HMEC	breast
27	chr3:52623400-52634000	Weak transcription	K562	blood
28	chr3:52623400-52634200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr3:52623400-52634200	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr3:52623400-52634600	Weak transcription	Fetal Kidney	kidney
31	chr3:52623400-52635000	Weak transcription	Colon Smooth Muscle	Colon
32	chr3:52623600-52634200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr3:52623600-52634800	Weak transcription	NHDF-Ad	bronchial
34	chr3:52623600-52635000	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr3:52626200-52634800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr3:52626400-52634000	Strong transcription	Fetal Brain Female	brain
37	chr3:52626600-52634400	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr3:52626800-52634600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr3:52627400-52634600	Strong transcription	Placenta	Placenta
40	chr3:52627400-52634800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr3:52627600-52634200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr3:52627800-52640600	Weak transcription	Fetal Heart	heart
43	chr3:52628000-52634600	Strong transcription	Cortex derived primary cultured neurospheres	brain
44	chr3:52628000-52634600	Strong transcription	HSMM	muscle
45	chr3:52628200-52634800	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr3:52628200-52635200	Weak transcription	Psoas Muscle	Psoas
47	chr3:52628400-52635000	Strong transcription	Dnd41	blood
48	chr3:52628600-52640200	Strong transcription	Muscle Satellite Cultured Cells	--
49	chr3:52628800-52634200	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr3:52629600-52635600	Weak transcription	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links