Variant report

Variant	rs13071584
Chromosome Location	chr3:52804487-52804488
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:52442610..52445343-chr3:52803282..52805357,2	K562	blood:
2	chr3:52803948..52806345-chr3:52865313..52866850,2	MCF-7	breast:
3	chr3:52803280..52805303-chr3:52832255..52833885,2	MCF-7	breast:
4	chr3:52803715..52805902-chr3:52874029..52875964,2	MCF-7	breast:
5	chr3:52802780..52807602-chr3:52827391..52831755,5	K562	blood:
6	chr3:52766545..52769494-chr3:52804406..52806680,2	K562	blood:
7	chr3:52722798..52726345-chr3:52803116..52806448,3	K562	blood:

Variant related genes	Relation type
ENSG00000055955	Chromatin interaction
ENSG00000213533	Chromatin interaction
ENSG00000212493	Chromatin interaction
ENSG00000010318	Chromatin interaction
ENSG00000163938	Chromatin interaction
ENSG00000252787	Chromatin interaction
ENSG00000238862	Chromatin interaction
ENSG00000222345	Chromatin interaction
ENSG00000162267	Chromatin interaction
ENSG00000248592	Chromatin interaction
ENSG00000163930	Chromatin interaction
ENSG00000270941	Chromatin interaction

Extended variants
information (count: 224 )
Associated
traits (count: 18 )

rSNPs within LD-proxies of this variant (count:220)

rs_ID	r²[population]
rs1014969	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1029871	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1042779	0.83[CHB][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.83[MEX][hapmap];0.84[MKK][hapmap];0.82[TSI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10510760	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1075653	0.86[JPT][hapmap];0.86[MKK][hapmap];0.81[EUR][1000 genomes]
rs1076425	0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs10780035	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10865973	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10865974	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1108842	1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap]
rs11130308	0.86[EUR][1000 genomes]
rs11130310	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11130311	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11130312	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11130313	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11130314	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11130315	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11130317	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11130319	0.85[ASN][1000 genomes]
rs11130321	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11130323	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11130324	0.89[ASN][1000 genomes]
rs11130325	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11130326	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11130327	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11177	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11235	0.95[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs11708075	0.81[EUR][1000 genomes]
rs11709448	0.81[ASN][1000 genomes]
rs11714030	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11714088	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11714419	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs11714565	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs11716747	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11717043	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11717836	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11718420	0.84[EUR][1000 genomes]
rs11718509	0.81[EUR][1000 genomes]
rs11720159	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes]
rs11720243	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs11720432	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12486554	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12486847	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12487445	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap]
rs12487591	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12488461	0.91[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12496476	0.82[EUR][1000 genomes]
rs12496634	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12497998	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12498066	0.82[EUR][1000 genomes]
rs12629699	0.80[EUR][1000 genomes]
rs12629701	0.84[EUR][1000 genomes]
rs12632265	0.85[ASN][1000 genomes]
rs12635140	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13060675	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13061253	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13061423	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13064064	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13065019	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13065851	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13068293	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13069481	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13074853	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13076193	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13079063	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13081031	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13082208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13082960	0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13083798	1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap]
rs13085331	0.82[EUR][1000 genomes]
rs13085775	0.84[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13085895	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13086297	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13086898	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13087772	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13095332	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1468638	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1561337	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17264436	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1866268	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2019065	0.83[CHB][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.87[LWK][hapmap];0.87[MEX][hapmap];0.89[MKK][hapmap];0.84[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2028216	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2071506	0.86[JPT][hapmap];0.86[MKK][hapmap];0.80[EUR][1000 genomes]
rs2071507	0.91[JPT][hapmap]
rs2071508	0.86[JPT][hapmap];0.80[EUR][1000 genomes]
rs2072390	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2079929	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2083180	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2109634	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2118540	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs2159644	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2164884	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs2164885	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2230534	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2230535	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2239549	0.86[JPT][hapmap];0.82[TSI][hapmap];0.87[EUR][1000 genomes]
rs2239550	0.86[EUR][1000 genomes]
rs2239551	0.86[JPT][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap];0.88[EUR][1000 genomes]
rs2239699	0.84[JPT][hapmap]
rs2240919	0.86[JPT][hapmap]
rs2240920	0.91[JPT][hapmap];0.87[MEX][hapmap]
rs2268023	0.86[JPT][hapmap]
rs2268024	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2268025	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2268026	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2268027	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2270197	0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs2276824	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2284350	0.82[EUR][1000 genomes]
rs2286798	0.91[JPT][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes]
rs2286800	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2289247	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2289250	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2300149	0.86[JPT][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap];0.87[EUR][1000 genomes]
rs2336145	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2336146	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs2336149	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2336542	0.95[CEU][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2336545	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2535629	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs2577831	1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap]
rs2590838	1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap]
rs2590846	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2710323	0.88[GIH][hapmap]
rs2878726	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs33967311	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34017441	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34157897	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34168767	0.81[EUR][1000 genomes]
rs34173654	0.80[ASN][1000 genomes]
rs34215106	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34291015	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34537256	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34610142	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34610878	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34739010	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34754793	0.86[EUR][1000 genomes]
rs34757451	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34918356	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34954168	0.81[EUR][1000 genomes]
rs35211965	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35212380	0.82[ASN][1000 genomes]
rs35249778	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35315313	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35409678	0.82[ASN][1000 genomes]
rs35526119	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35976524	0.83[ASN][1000 genomes]
rs3617	0.82[CHB][hapmap]
rs3733039	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3733041	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3733045	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3755798	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3755806	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3774354	0.86[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs3774355	0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs3774365	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3774366	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3852066	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs4130905	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4435633	0.83[EUR][1000 genomes]
rs4687546	0.83[EUR][1000 genomes]
rs4687548	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4687549	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4687550	0.86[JPT][hapmap]
rs4687551	0.81[JPT][hapmap]
rs4687629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs4687633	0.82[EUR][1000 genomes]
rs4687636	0.86[TSI][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4687637	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4687638	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4687639	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4687644	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4687648	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4687650	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62253700	0.82[EUR][1000 genomes]
rs62253703	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62253733	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62255362	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62255371	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62255396	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6414570	0.87[EUR][1000 genomes]
rs6445529	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6445531	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6445534	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6445535	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6617	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67539070	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6762457	0.81[EUR][1000 genomes]
rs6762813	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6768697	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6770463	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6778329	0.90[JPT][hapmap];0.81[EUR][1000 genomes]
rs678	0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs6786043	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap]
rs6787154	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6792369	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs68021750	0.82[EUR][1000 genomes]
rs6803012	0.91[CEU][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6804145	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6805156	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs6976	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7611731	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7614498	0.84[EUR][1000 genomes]
rs7620039	0.86[ASN][1000 genomes]
rs7622694	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7624716	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7625743	0.84[EUR][1000 genomes]
rs7628578	0.82[EUR][1000 genomes]
rs7638162	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7642198	0.81[EUR][1000 genomes]
rs7646741	0.89[ASN][1000 genomes]
rs7652191	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs7653028	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs767418	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8906	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9324	0.86[JPT][hapmap];0.80[MKK][hapmap];0.81[EUR][1000 genomes]
rs9879090	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs9881468	0.86[JPT][hapmap]
rs9917834	0.86[EUR][1000 genomes]
rs998909	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv984563	chr3:52516115-52867075	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv834698	chr3:52749983-52928219	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	esv2762328	chr3:52774884-53002150	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	esv3446915	chr3:52786850-53049217	Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:18)

SNP	Gene	Cis/trans	Tissue	Source
rs13071584	PBRM1	cis	Artery Tibial	GTEx
rs13071584	SPCS1	cis	parietal	SCAN
rs13071584	NT5DC2	cis	lung	GTEx
rs13071584	TMEM110	cis	parietal	SCAN
rs13071584	GLT8D1	Cis_1M	lymphoblastoid	RTeQTL
rs13071584	GLYCTK	cis	parietal	SCAN
rs13071584	NT5DC2	cis	lymphoblastoid	seeQTL
rs13071584	GNL3	cis	cerebellum	SCAN
rs13071584	NT5DC2	cis	Skin Sun Exposed Lower leg	GTEx
rs13071584	GNL3	cis	parietal	SCAN
rs13071584	NEK4	cis	parietal	SCAN
rs13071584	RBM6	cis	parietal	SCAN
rs13071584	PBRM1	cis	Thyroid	GTEx
rs13071584	NT5DC2	Cis_1M	lymphoblastoid	RTeQTL
rs13071584	GLT8D1	cis	lymphoblastoid	seeQTL
rs13071584	RBM6	cis	cerebellum	SCAN
rs13071584	NEK4	cis	cerebellum	SCAN
rs13071584	ITIH4	cis	parietal	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52803400-52805600	Active TSS	NHDF-Ad	bronchial
2	chr3:52803600-52804600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:52803600-52804600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:52803600-52805600	Active TSS	A549	lung
5	chr3:52803600-52806000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:52803800-52804600	Flanking Active TSS	Primary hematopoietic stem cells	blood
7	chr3:52803800-52804600	Enhancers	Spleen	Spleen
8	chr3:52803800-52805200	Active TSS	NH-A	brain
9	chr3:52803800-52805400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:52803800-52805400	Active TSS	Fetal Intestine Large	intestine
11	chr3:52803800-52805400	Active TSS	Fetal Intestine Small	intestine
12	chr3:52803800-52805600	Active TSS	H1 Cell Line	embryonic stem cell
13	chr3:52803800-52805600	Active TSS	H9 Cell Line	embryonic stem cell
14	chr3:52803800-52805600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:52803800-52805600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr3:52803800-52805600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr3:52803800-52805600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
18	chr3:52803800-52805600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr3:52803800-52805800	Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr3:52803800-52805800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:52803800-52805800	Active TSS	Pancreatic Islets	Pancreatic Islet
22	chr3:52804000-52804600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
23	chr3:52804000-52804600	Active TSS	Right Atrium	heart
24	chr3:52804000-52805400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
25	chr3:52804000-52805400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr3:52804000-52805400	Active TSS	Muscle Satellite Cultured Cells	--
27	chr3:52804000-52805400	Active TSS	K562	blood
28	chr3:52804000-52805400	Active TSS	NHLF	lung
29	chr3:52804000-52805600	Active TSS	ES-I3 Cell Line	embryonic stem cell
30	chr3:52804000-52805600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr3:52804000-52805600	Active TSS	HUES64 Cell Line	embryonic stem cell
32	chr3:52804000-52805600	Active TSS	Aorta	Aorta
33	chr3:52804000-52805600	Active TSS	Gastric	stomach
34	chr3:52804000-52805800	Active TSS	iPS-15b Cell Line	embryonic stem cell
35	chr3:52804200-52804600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
36	chr3:52804200-52805200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
37	chr3:52804200-52805200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr3:52804200-52805200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
39	chr3:52804200-52805200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr3:52804200-52805200	Active TSS	HMEC	breast
41	chr3:52804200-52805200	Active TSS	NHEK	skin
42	chr3:52804200-52805200	Active TSS	Osteobl	bone
43	chr3:52804200-52805400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr3:52804200-52805400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr3:52804200-52805400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr3:52804200-52805400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr3:52804200-52805400	Active TSS	Brain Anterior Caudate	brain
48	chr3:52804200-52805400	Active TSS	Brain Germinal Matrix	brain
49	chr3:52804200-52805400	Active TSS	Brain Hippocampus Middle	brain
50	chr3:52804200-52805400	Active TSS	Brain Inferior Temporal Lobe	brain

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