Variant report

Variant	rs1108842
Chromosome Location	chr3:52720080-52720081
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 241 )
Associated
traits (count: 22 )

rSNPs within LD-proxies of this variant (count:240)

rs_ID	r²[population]
rs1010552	0.84[CHB][hapmap]
rs1010553	0.82[CHB][hapmap];0.88[CHD][hapmap]
rs1010554	0.91[CHB][hapmap];0.90[CHD][hapmap]
rs1014969	1.00[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap]
rs1029871	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1042779	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs10433615	0.83[ASN][1000 genomes]
rs10510760	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs10780035	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs10865973	1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs10865974	1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10933	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11130307	0.81[ASN][1000 genomes]
rs11130308	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11130310	1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap];0.93[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs11130311	0.85[ASN][1000 genomes]
rs11130312	1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs11130313	0.86[ASN][1000 genomes]
rs11130314	0.87[ASN][1000 genomes]
rs11130315	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs11130317	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs11130319	0.88[ASN][1000 genomes]
rs11130321	0.81[ASN][1000 genomes]
rs11130323	1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs11130324	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11177	1.00[CHB][hapmap];0.93[CHD][hapmap];0.87[JPT][hapmap];0.91[ASN][1000 genomes]
rs11235	0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1133415	0.91[CHB][hapmap];0.85[CHD][hapmap];0.91[JPT][hapmap]
rs11708075	0.83[ASN][1000 genomes]
rs11709448	0.85[ASN][1000 genomes]
rs11711421	0.87[JPT][hapmap]
rs11714030	0.82[ASN][1000 genomes]
rs11714088	0.82[ASN][1000 genomes]
rs11714419	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs11714565	1.00[CHB][hapmap];0.90[CHD][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs11716747	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];0.80[MKK][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs11717043	0.85[ASN][1000 genomes]
rs11717836	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs11718420	0.82[ASN][1000 genomes]
rs11718509	0.81[ASN][1000 genomes]
rs11719514	0.85[ASN][1000 genomes]
rs11720159	1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs11720243	1.00[CHB][hapmap];0.90[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs11720432	0.85[ASN][1000 genomes]
rs12486554	0.90[ASN][1000 genomes]
rs12486847	0.86[ASN][1000 genomes]
rs12487445	1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs12487591	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs12488461	0.95[CHB][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs12488527	0.83[ASN][1000 genomes]
rs12489828	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12496476	0.85[ASN][1000 genomes]
rs12496634	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs12497998	1.00[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap];0.91[LWK][hapmap];0.85[MKK][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs12498066	0.84[ASN][1000 genomes]
rs12629699	0.81[ASN][1000 genomes]
rs12629701	0.81[ASN][1000 genomes]
rs12632265	0.88[ASN][1000 genomes]
rs12632381	0.81[ASN][1000 genomes]
rs12635140	1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.91[LWK][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs13060675	0.85[ASN][1000 genomes]
rs13061253	0.91[ASN][1000 genomes]
rs13061423	0.81[ASN][1000 genomes]
rs13063160	0.95[CHB][hapmap];0.88[CHD][hapmap];0.83[GIH][hapmap];0.87[JPT][hapmap];0.91[LWK][hapmap];0.84[MKK][hapmap];0.96[YRI][hapmap]
rs13064064	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs13065019	0.86[ASN][1000 genomes]
rs13065851	0.85[ASN][1000 genomes]
rs13068293	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs13069481	0.86[ASN][1000 genomes]
rs13071584	1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap]
rs13074853	0.91[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs13076193	0.92[ASN][1000 genomes]
rs13079063	1.00[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap];0.93[LWK][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs13081028	0.82[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];0.87[LWK][hapmap];0.90[TSI][hapmap]
rs13081031	0.86[ASN][1000 genomes]
rs13081155	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13082208	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs13082960	0.95[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs13083798	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13085331	0.84[ASN][1000 genomes]
rs13085775	0.91[CHB][hapmap];0.88[CHD][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.93[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs13085895	1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs13086297	0.86[ASN][1000 genomes]
rs13086898	0.85[ASN][1000 genomes]
rs13095332	0.82[ASN][1000 genomes]
rs13303	0.95[CHB][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap]
rs1468638	0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs1561337	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs17052256	1.00[CHB][hapmap];0.90[CHD][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap]
rs17052259	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs17264436	1.00[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs1866268	1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1961958	0.95[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap]
rs1961959	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs2019065	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs2028216	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs2071507	0.83[JPT][hapmap]
rs2072390	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.91[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2079929	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2083180	1.00[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];0.88[MKK][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2109634	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2118540	1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs2159644	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2164884	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs2164885	1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap];0.93[LWK][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2230535	1.00[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap]
rs2240920	0.83[JPT][hapmap]
rs2251219	1.00[CHB][hapmap];0.85[CHD][hapmap];0.91[JPT][hapmap]
rs2268025	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2268026	1.00[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs2268027	1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs2276824	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2286798	0.83[JPT][hapmap]
rs2286800	0.80[ASN][1000 genomes]
rs2289247	1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2289249	1.00[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap]
rs2289250	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs2336145	0.84[ASN][1000 genomes]
rs2336146	1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.91[LWK][hapmap];0.88[MKK][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2336148	0.82[ASN][1000 genomes]
rs2336149	1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];0.88[MKK][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2336542	0.93[ASN][1000 genomes]
rs2336545	1.00[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs2535629	0.83[CHB][hapmap]
rs2577831	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.94[MEX][hapmap];0.92[TSI][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2590838	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2590846	0.87[ASN][1000 genomes]
rs2710323	0.85[CEU][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap]
rs2878628	1.00[CHB][hapmap];0.88[CHD][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap]
rs2878726	0.85[ASN][1000 genomes]
rs33967311	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs34017441	1.00[CHB][hapmap];0.90[CHD][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs34115864	0.81[ASN][1000 genomes]
rs34157897	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs34168767	0.82[ASN][1000 genomes]
rs34173654	0.85[ASN][1000 genomes]
rs34215106	0.85[ASN][1000 genomes]
rs34291015	0.82[ASN][1000 genomes]
rs34341238	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs34537256	0.85[ASN][1000 genomes]
rs34610142	0.88[ASN][1000 genomes]
rs34610878	0.83[ASN][1000 genomes]
rs34739010	0.91[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs34754793	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs34757451	0.86[ASN][1000 genomes]
rs34918356	0.80[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs34954168	0.80[ASN][1000 genomes]
rs35107891	0.80[ASN][1000 genomes]
rs35211965	0.86[ASN][1000 genomes]
rs35212380	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35249778	0.85[ASN][1000 genomes]
rs35315313	0.91[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs35409678	0.85[ASN][1000 genomes]
rs35526119	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs35976524	0.87[ASN][1000 genomes]
rs3617	0.82[CHB][hapmap]
rs3733039	1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.91[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs3733041	1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs3733045	1.00[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs3755798	0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs3755806	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs3774349	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3774365	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs3774366	1.00[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];0.88[MKK][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs3796353	1.00[CHB][hapmap];0.90[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap]
rs3852066	1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4130905	0.93[ASN][1000 genomes]
rs4282054	0.95[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.87[LWK][hapmap];0.89[MEX][hapmap];0.88[TSI][hapmap]
rs4435633	0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs4475032	0.95[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap]
rs4687546	0.80[ASN][1000 genomes]
rs4687547	0.80[ASN][1000 genomes]
rs4687548	1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs4687549	0.82[ASN][1000 genomes]
rs4687625	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs4687626	0.95[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap]
rs4687629	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs4687633	0.84[ASN][1000 genomes]
rs4687636	0.85[ASN][1000 genomes]
rs4687637	0.85[ASN][1000 genomes]
rs4687638	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs4687639	0.85[ASN][1000 genomes]
rs4687644	0.91[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs4687648	0.81[AFR][1000 genomes]
rs62253700	0.83[ASN][1000 genomes]
rs62253703	0.85[ASN][1000 genomes]
rs62253733	0.85[ASN][1000 genomes]
rs62255362	0.87[ASN][1000 genomes]
rs62255371	0.87[ASN][1000 genomes]
rs62255396	0.81[ASN][1000 genomes]
rs6414569	0.80[AFR][1000 genomes]
rs6445528	0.95[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap]
rs6445529	0.85[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6445531	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6445534	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6445535	1.00[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap];0.89[LWK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6617	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs67539070	0.93[ASN][1000 genomes]
rs6762457	0.80[ASN][1000 genomes]
rs6762813	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs6768697	0.87[ASN][1000 genomes]
rs6770463	0.87[ASN][1000 genomes]
rs6778329	0.81[JPT][hapmap]
rs6778735	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap]
rs6778844	1.00[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap]
rs678	0.83[JPT][hapmap]
rs6786043	1.00[CHB][hapmap];0.90[CHD][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap]
rs6786919	1.00[CHB][hapmap];0.90[CHD][hapmap];0.83[GIH][hapmap];0.87[JPT][hapmap]
rs6787154	0.90[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6790330	0.84[ASN][1000 genomes]
rs6796726	0.84[ASN][1000 genomes]
rs6798246	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs68021750	0.83[ASN][1000 genomes]
rs6803012	0.88[ASN][1000 genomes]
rs6804145	1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6805156	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs6976	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs731831	0.82[CHB][hapmap]
rs7611731	1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7612511	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7614498	0.80[ASN][1000 genomes]
rs7614981	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap]
rs7620039	0.85[ASN][1000 genomes]
rs7622694	1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];0.88[MKK][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7623199	0.81[ASN][1000 genomes]
rs7624716	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7625743	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs7628578	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7638162	0.90[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7638808	0.95[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap]
rs7642198	0.86[ASN][1000 genomes]
rs7646741	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7652191	1.00[CHB][hapmap];0.90[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs767418	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.91[LWK][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs8906	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs9714129	0.87[ASN][1000 genomes]
rs9853056	0.86[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.89[MEX][hapmap];0.85[TSI][hapmap]
rs9879090	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9917834	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs998909	1.00[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv984563	chr3:52516115-52867075	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Adiponectin levels	22479202	GWAS catalog

mRNA abundance (count:21)

SNP	Gene	Cis/trans	Tissue	Source
rs1108842	NEK4	cis	parietal	SCAN
rs1108842	NT5DC2	cis	lymphoblastoid	seeQTL
rs1108842	GLYCTK	cis	parietal	SCAN
rs1108842	GNL3	cis	parietal	SCAN
rs1108842	ITIH4	cis	parietal	SCAN
rs1108842	FLJ12442	cis	multi-tissue	Pritchard
rs1108842	GLT8D1	cis	lymphoblastoid	seeQTL
rs1108842	NDUFAF3	cis	parietal	SCAN
rs1108842	PBRM1	cis	Thyroid	GTEx
rs1108842	SEMA3G	cis	parietal	SCAN
rs1108842	RBM6	cis	cerebellum	SCAN
rs1108842	NT5DC2	cis	cerebellum	SCAN
rs1108842	WDR6	cis	cerebellum	SCAN
rs1108842	GNL3	cis	cerebellum	SCAN
rs1108842	QARS	cis	parietal	SCAN
rs1108842	SPCS1	cis	multi-tissue	Pritchard
rs1108842	SPCS1	cis	parietal	SCAN
rs1108842	PBRM1	cis	Artery Tibial	GTEx
rs1108842	NEK4	cis	cerebellum	SCAN
rs1108842	NT5DC2	Cis_1M	lymphoblastoid	RTeQTL
rs1108842	NT5DC2	cis	multi-tissue	Pritchard

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52717800-52721000	Active TSS	GM12878-XiMat	blood
2	chr3:52718000-52720600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:52718000-52721200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:52718000-52721200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr3:52718200-52720400	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr3:52718200-52720400	Active TSS	Fetal Brain Female	brain
7	chr3:52718200-52720600	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr3:52718400-52720400	Active TSS	K562	blood
9	chr3:52718400-52720800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:52718400-52720800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:52718400-52720800	Active TSS	Fetal Thymus	thymus
12	chr3:52718400-52720800	Active TSS	NHLF	lung
13	chr3:52718400-52721200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:52718600-52720800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:52718600-52721200	Active TSS	Psoas Muscle	Psoas
16	chr3:52718800-52720200	Active TSS	HUES6 Cell Line	embryonic stem cell
17	chr3:52718800-52720200	Active TSS	Rectal Smooth Muscle	rectum
18	chr3:52718800-52720200	Active TSS	Right Ventricle	heart
19	chr3:52718800-52720400	Active TSS	Brain Germinal Matrix	brain
20	chr3:52718800-52720400	Active TSS	Thymus	Thymus
21	chr3:52718800-52720600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:52718800-52720600	Active TSS	Breast Myoepithelial Primary Cells	Breast
23	chr3:52718800-52720800	Active TSS	H1 Cell Line	embryonic stem cell
24	chr3:52718800-52720800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr3:52718800-52720800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:52718800-52720800	Active TSS	Stomach Mucosa	stomach
27	chr3:52718800-52720800	Active TSS	HSMM	muscle
28	chr3:52718800-52720800	Active TSS	NHDF-Ad	bronchial
29	chr3:52718800-52721000	Active TSS	Right Atrium	heart
30	chr3:52718800-52721200	Active TSS	ES-I3 Cell Line	embryonic stem cell
31	chr3:52719000-52720200	Active TSS	iPS-15b Cell Line	embryonic stem cell
32	chr3:52719000-52720200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr3:52719000-52720200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
34	chr3:52719000-52720200	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
35	chr3:52719000-52720200	Active TSS	Brain Inferior Temporal Lobe	brain
36	chr3:52719000-52720200	Active TSS	Fetal Intestine Small	intestine
37	chr3:52719000-52720200	Active TSS	Dnd41	blood
38	chr3:52719000-52720400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr3:52719000-52720400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr3:52719000-52720400	Active TSS	Muscle Satellite Cultured Cells	--
41	chr3:52719000-52720400	Active TSS	Brain Angular Gyrus	brain
42	chr3:52719000-52720400	Active TSS	Brain Anterior Caudate	brain
43	chr3:52719000-52720400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
44	chr3:52719000-52720400	Active TSS	Duodenum Mucosa	Duodenum
45	chr3:52719000-52720400	Active TSS	Duodenum Smooth Muscle	Duodenum
46	chr3:52719000-52720400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
47	chr3:52719000-52720400	Active TSS	Rectal Mucosa Donor 29	rectum
48	chr3:52719000-52720400	Active TSS	Rectal Mucosa Donor 31	rectum
49	chr3:52719000-52720600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr3:52719000-52720600	Active TSS	Cortex derived primary cultured neurospheres	brain

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