Variant report

Variant	rs6778735
Chromosome Location	chr3:52565100-52565101
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:19)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:19 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr3:52563412-52565225	SK-N-SH	brain:	n/a	n/a
2	POLR2A	chr3:52564720-52565393	GM12892	blood:	n/a	n/a
3	POLR2A	chr3:52564728-52566280	HepG2	liver:	n/a	n/a
4	POLR2A	chr3:52565000-52565207	GM12878	blood:	n/a	n/a
5	POLR2A	chr3:52563501-52565690	U87	brain:	n/a	n/a
6	POLR2A	chr3:52564920-52565514	HepG2	liver:	n/a	n/a
7	POLR2A	chr3:52564996-52565225	ECC-1	luminal epithelium:	n/a	n/a
8	POLR2A	chr3:52564999-52565285	H1-hESC	embryonic stem cell:	n/a	n/a
9	POLR2A	chr3:52563182-52567206	K562	blood:	n/a	n/a
10	POLR2A	chr3:52564880-52565486	GM12892	blood:	n/a	n/a
11	POLR2A	chr3:52560598-52572342	HepG2	liver:	n/a	n/a
12	POLR2A	chr3:52563396-52565690	U87	brain:	n/a	n/a
13	POLR2A	chr3:52564917-52567026	SK-N-MC	brain:	n/a	n/a
14	POLR2A	chr3:52564832-52568664	K562	blood:	n/a	n/a
15	POLR2A	chr3:52564682-52565346	GM12878	blood:	n/a	n/a
16	CTCF	chr3:52565020-52565170	GM12864	blood:	n/a	n/a
17	POLR2A	chr3:52564877-52565215	HUVEC	blood vessel:	n/a	n/a
18	POLR2A	chr3:52564773-52569282	K562	blood:	n/a	n/a
19	POLR2A	chr3:52565006-52565202	GM12878	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:52489605..52491332-chr3:52564945..52566721,2	K562	blood:
2	chr3:52513829..52516090-chr3:52563915..52565701,2	MCF-7	breast:
3	chr3:52555579..52557218-chr3:52564676..52566664,2	MCF-7	breast:
4	chr3:52559482..52561203-chr3:52562436..52565441,3	MCF-7	breast:

No data

Variant related genes	Relation type
SMIM4	TF binding region
NT5DC2	TF binding region
ENSG00000010322	Chromatin interaction
ENSG00000010327	Chromatin interaction
ENSG00000168268	Chromatin interaction

Extended variants
information (count: 133 )
Associated
traits (count: 17 )

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs1010552	0.90[CHB][hapmap]
rs1010553	0.92[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.85[EUR][1000 genomes]
rs1010554	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10510760	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs10780035	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs10865973	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10865974	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs1108842	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap]
rs11130306	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11130310	0.95[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap]
rs11130312	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11130315	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs11130317	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs11177	0.95[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap]
rs11235	0.91[CHB][hapmap];0.89[JPT][hapmap]
rs1133415	0.95[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];0.90[ASN][1000 genomes]
rs11709284	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11711421	0.83[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs11714419	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs11714565	0.95[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap]
rs11716747	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs11720159	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs11720243	0.95[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap]
rs12487445	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs12487591	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs12488461	0.91[CHB][hapmap];0.84[CHD][hapmap];0.86[JPT][hapmap]
rs12489732	0.92[ASN][1000 genomes]
rs12489828	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12496634	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs12635140	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs13059862	0.87[ASN][1000 genomes]
rs13060048	0.87[ASN][1000 genomes]
rs13063160	0.91[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs13064064	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs13068293	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs13076398	0.91[ASN][1000 genomes]
rs13079063	0.95[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap]
rs13081028	0.92[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13083798	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.88[TSI][hapmap]
rs13085775	0.86[CHB][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap]
rs13085895	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs13094915	0.81[CHB][hapmap]
rs13303	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13621	0.91[ASN][1000 genomes]
rs1561337	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs1570	0.89[ASN][1000 genomes]
rs17052256	0.95[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];0.89[ASN][1000 genomes]
rs17052259	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs17264436	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1821879	0.85[ASN][1000 genomes]
rs1866268	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs1961958	0.91[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs1961959	0.86[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs2015971	0.82[CHB][hapmap]
rs2028216	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs2083180	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs2118540	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs2164884	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2164885	0.95[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap]
rs2251219	0.95[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs2276824	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2289247	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs2289249	0.95[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs2289250	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs2336146	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs2336149	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs2577831	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.85[TSI][hapmap]
rs2590838	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap];0.80[ASN][1000 genomes]
rs28661185	0.86[ASN][1000 genomes]
rs2878628	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];0.89[ASN][1000 genomes]
rs33964154	0.89[ASN][1000 genomes]
rs33967311	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs34005367	0.93[ASN][1000 genomes]
rs34017441	0.95[CHB][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap]
rs35526119	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs3733039	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs3733041	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs3733045	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs3755798	0.91[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs3755806	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs3774365	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs3774366	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs3796353	0.95[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];0.89[ASN][1000 genomes]
rs3852066	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs4234633	0.87[ASN][1000 genomes]
rs4282054	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4434138	0.87[ASN][1000 genomes]
rs4475032	1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs4687548	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs4687624	0.87[ASN][1000 genomes]
rs4687625	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs4687626	1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs4687629	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs4687638	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs62256903	0.91[ASN][1000 genomes]
rs6445528	1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs6445534	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs6617	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs66782572	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66824127	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67409736	0.91[EUR][1000 genomes]
rs6762813	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs6778844	0.95[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs6786043	0.95[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs6786919	0.95[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.81[LWK][hapmap];0.87[ASN][1000 genomes]
rs6788887	0.87[ASN][1000 genomes]
rs6788993	0.87[ASN][1000 genomes]
rs6798246	0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs6804145	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs6805156	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs6976	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs731831	0.86[CHB][hapmap];0.83[CHD][hapmap]
rs7611731	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs7614981	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7622694	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs7624716	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs7636227	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7638808	1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs7652191	0.95[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap]
rs8906	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs9758945	0.83[ASN][1000 genomes]
rs9853056	0.96[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.89[GIH][hapmap];0.84[MEX][hapmap];0.87[TSI][hapmap]
rs9879090	1.00[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876789	chr3:52247110-52575831	Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
2	nsv834697	chr3:52400578-52579417	Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv876792	chr3:52430526-52575831	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv876793	chr3:52450043-52584787	Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	esv1818902	chr3:52481406-52572056	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	nsv984563	chr3:52516115-52867075	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
7	nsv590305	chr3:52535586-52569480	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
8	nsv590307	chr3:52540773-52572056	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
9	nsv876795	chr3:52544470-52572056	Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
10	nsv876796	chr3:52549676-52572056	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

mRNA abundance (count:17)

SNP	Gene	Cis/trans	Tissue	Source
rs6778735	NT5DC2	cis	lymphoblastoid	seeQTL
rs6778735	SEMA3G	cis	parietal	SCAN
rs6778735	NT5DC2	cis	cerebellum	SCAN
rs6778735	NEK4	cis	multi-tissue	Pritchard
rs6778735	NT5DC2	Cis_1M	lymphoblastoid	RTeQTL
rs6778735	RBM6	cis	cerebellum	SCAN
rs6778735	NDUFAF3	cis	parietal	SCAN
rs6778735	NT5DC2	cis	multi-tissue	Pritchard
rs6778735	NEK4	cis	parietal	SCAN
rs6778735	SPCS1	cis	parietal	SCAN
rs6778735	QARS	cis	parietal	SCAN
rs6778735	GLYCTK	cis	parietal	SCAN
rs6778735	NEK4	cis	cerebellum	SCAN
rs6778735	GLT8D1	cis	lymphoblastoid	seeQTL
rs6778735	NT5DC2	cis	Skin Sun Exposed Lower leg	GTEx
rs6778735	GNL3	cis	parietal	SCAN
rs6778735	GNL3	cis	cerebellum	SCAN

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52533600-52566000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr3:52550600-52566600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:52552800-52565400	Weak transcription	Brain Hippocampus Middle	brain
4	chr3:52552800-52566000	Weak transcription	Stomach Mucosa	stomach
5	chr3:52552800-52566200	Weak transcription	Brain Angular Gyrus	brain
6	chr3:52554200-52566000	Weak transcription	HSMM	muscle
7	chr3:52554800-52567200	Weak transcription	Aorta	Aorta
8	chr3:52555400-52565200	Strong transcription	Fetal Intestine Small	intestine
9	chr3:52555800-52565200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:52556000-52566000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:52556200-52565200	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr3:52556800-52566400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr3:52557000-52565800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr3:52557400-52565800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr3:52558200-52566200	Genic enhancers	Fetal Lung	lung
16	chr3:52558400-52566200	Weak transcription	Fetal Kidney	kidney
17	chr3:52558400-52566200	Genic enhancers	Fetal Muscle Trunk	muscle
18	chr3:52558400-52567000	Weak transcription	Small Intestine	intestine
19	chr3:52558600-52566200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:52558600-52566600	Weak transcription	Colon Smooth Muscle	Colon
21	chr3:52558800-52566400	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr3:52558800-52566600	Weak transcription	Brain Cingulate Gyrus	brain
23	chr3:52559000-52566800	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr3:52559200-52565800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr3:52559800-52566400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr3:52560000-52566000	Weak transcription	Primary B cells from peripheral blood	blood
27	chr3:52560200-52566600	Weak transcription	Liver	Liver
28	chr3:52560600-52566800	Weak transcription	HSMMtube	muscle
29	chr3:52561400-52565800	Weak transcription	Hela-S3	cervix
30	chr3:52561600-52565400	Weak transcription	GM12878-XiMat	blood
31	chr3:52562000-52566000	Weak transcription	HMEC	breast
32	chr3:52562200-52565400	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr3:52562200-52566000	Weak transcription	Primary hematopoietic stem cells	blood
34	chr3:52562200-52566000	Weak transcription	Pancreas	Pancrea
35	chr3:52562400-52566000	Weak transcription	Brain Substantia Nigra	brain
36	chr3:52562400-52566400	Weak transcription	Thymus	Thymus
37	chr3:52562600-52565800	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr3:52562600-52566600	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr3:52562800-52565200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr3:52562800-52566600	Enhancers	Fetal Heart	heart
41	chr3:52562800-52566600	Weak transcription	Gastric	stomach
42	chr3:52562800-52566600	Enhancers	Right Atrium	heart
43	chr3:52563000-52566000	Weak transcription	Duodenum Mucosa	Duodenum
44	chr3:52563000-52566800	Enhancers	Lung	lung
45	chr3:52563200-52565200	Weak transcription	Brain Anterior Caudate	brain
46	chr3:52563200-52565400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr3:52563200-52565800	Weak transcription	Fetal Thymus	thymus
48	chr3:52563200-52566000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr3:52563200-52566400	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr3:52563200-52566600	Enhancers	Skeletal Muscle Female	skeletal muscle

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