Variant report

Variant	rs6798246
Chromosome Location	chr3:52599922-52599923
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:52569848..52572166-chr3:52599893..52603784,3	K562	blood:

Variant related genes	Relation type
ENSG00000168273	Chromatin interaction

Extended variants
information (count: 213 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:211)

rs_ID	r²[population]
rs1010552	0.85[CHB][hapmap]
rs1010553	0.82[CHB][hapmap]
rs1010554	0.91[CHB][hapmap]
rs1029871	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10433615	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10510760	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10780035	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.81[EUR][1000 genomes]
rs10865973	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10865974	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1108842	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs11130307	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11130308	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11130310	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs11130311	0.82[ASN][1000 genomes]
rs11130312	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11130313	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11130314	0.82[ASN][1000 genomes]
rs11130315	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11130317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11130323	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs11177	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs11235	0.95[CHB][hapmap]
rs1133415	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11708075	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11709284	0.89[ASN][1000 genomes]
rs11709448	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11711421	0.80[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs11714419	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11714565	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11716747	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11717043	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11718420	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11718509	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11719514	0.83[EUR][1000 genomes]
rs11720159	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11720243	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11720432	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12486847	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12487445	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12487591	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12488461	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12489732	0.95[ASN][1000 genomes]
rs12489828	0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs12496634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12497998	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12498066	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12629699	0.82[ASN][1000 genomes]
rs12629701	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12632265	0.81[ASN][1000 genomes]
rs12632381	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12635140	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13059862	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13060048	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13060675	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13061253	0.80[EUR][1000 genomes]
rs13063160	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13064064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13065019	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13065851	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13068293	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13069481	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13076398	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13078422	0.83[EUR][1000 genomes]
rs13079063	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs13081028	0.86[CHB][hapmap]
rs13081031	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13082208	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13082960	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs13083798	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs13085331	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13085775	0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs13085895	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs13086297	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13086898	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13303	0.95[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs13621	0.94[ASN][1000 genomes]
rs1561337	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1570	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17052256	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17052259	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17264436	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1821879	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1866268	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1961958	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1961959	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2015971	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs2028216	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2072390	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2079929	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2083180	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2118540	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2159644	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2164884	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2164885	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2251219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2268025	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs2268026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs2268027	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.81[EUR][1000 genomes]
rs2276824	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs2289247	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2289249	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2289250	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2336145	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2336146	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2336148	0.81[ASN][1000 genomes]
rs2336149	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2336542	0.95[CEU][hapmap]
rs2336545	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs2577831	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2590838	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2590846	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28661185	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2878628	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2878726	0.82[EUR][1000 genomes]
rs33964154	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs33967311	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34005367	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34017441	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs34115864	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34173654	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34215106	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34341238	0.81[ASN][1000 genomes]
rs34537256	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34610142	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34754793	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34757451	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34954168	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35107891	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35211965	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35249778	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35409678	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35526119	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35976524	0.82[ASN][1000 genomes]
rs3733039	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3733041	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3733045	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3755798	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs3755806	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3774365	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3774366	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3796353	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3852066	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4130905	0.80[EUR][1000 genomes]
rs4234633	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4282054	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs4336110	0.81[EUR][1000 genomes]
rs4434138	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4435633	0.81[ASN][1000 genomes]
rs4475032	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4687546	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4687547	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4687548	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4687549	0.81[EUR][1000 genomes]
rs4687624	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4687625	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4687626	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4687629	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4687630	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4687633	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4687636	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4687637	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4687638	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4687639	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62253700	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62253703	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62253733	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62255362	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62255371	0.81[EUR][1000 genomes]
rs62256903	0.95[ASN][1000 genomes]
rs6445528	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6445529	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6445534	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6445535	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6617	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6762457	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6762813	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs6768697	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6770463	0.82[ASN][1000 genomes]
rs6778735	0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs6778844	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6786043	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6786919	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6788887	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6788993	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6790330	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6796726	0.83[ASN][1000 genomes]
rs68021750	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6803012	0.95[CEU][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6804145	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6805156	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6976	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.80[EUR][1000 genomes]
rs731831	0.82[CHB][hapmap]
rs7611731	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7614498	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7614981	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs7622694	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7623199	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7624716	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7625743	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7628578	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7636227	0.89[ASN][1000 genomes]
rs7638808	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7642198	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7651709	0.81[YRI][hapmap]
rs7652191	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs767418	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8906	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs9758945	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9853056	0.86[CHB][hapmap]
rs9879090	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs9917834	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv984563	chr3:52516115-52867075	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv822092	chr3:52598226-52601851	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs6798246	NT5DC2	cis	Lymphoblastoid	GTEx
rs6798246	NT5DC2	cis	Skin Sun Exposed Lower leg	GTEx
rs6798246	FLJ12442	cis	multi-tissue	Pritchard
rs6798246	GLT8D1	Cis_1M	lymphoblastoid	RTeQTL
rs6798246	PBRM1	cis	Thyroid	GTEx
rs6798246	NT5DC2	Cis_1M	lymphoblastoid	RTeQTL
rs6798246	NT5DC2	cis	multi-tissue	Pritchard

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52572400-52633000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:52574400-52623800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr3:52574800-52605000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:52576800-52625600	Strong transcription	Fetal Thymus	thymus
5	chr3:52577600-52605200	Strong transcription	Dnd41	blood
6	chr3:52578200-52625600	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr3:52578400-52600600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr3:52578800-52601400	Strong transcription	Primary B cells from peripheral blood	blood
9	chr3:52581000-52601000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr3:52583200-52600400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:52583200-52600800	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr3:52585800-52627400	Weak transcription	Fetal Heart	heart
13	chr3:52587000-52602400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr3:52587200-52719200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr3:52589600-52611600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:52591000-52688000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr3:52591200-52601400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:52592200-52719200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr3:52592400-52601600	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr3:52592600-52607600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr3:52592600-52610400	Weak transcription	A549	lung
22	chr3:52594400-52607800	Weak transcription	Aorta	Aorta
23	chr3:52594400-52614800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr3:52595200-52631000	Weak transcription	Stomach Mucosa	stomach
25	chr3:52595800-52607800	Weak transcription	Brain Cingulate Gyrus	brain
26	chr3:52596000-52600000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr3:52596000-52600800	Strong transcription	Osteobl	bone
28	chr3:52596000-52607600	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr3:52596000-52608200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr3:52596000-52608200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr3:52596000-52608200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr3:52596000-52611800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr3:52596000-52612400	Weak transcription	Gastric	stomach
34	chr3:52596000-52622800	Weak transcription	K562	blood
35	chr3:52596000-52624200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr3:52596200-52601400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr3:52596200-52604000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr3:52596400-52611800	Weak transcription	Spleen	Spleen
39	chr3:52597400-52606800	Weak transcription	Brain Hippocampus Middle	brain
40	chr3:52597400-52608000	Weak transcription	NHEK	skin
41	chr3:52597400-52611600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr3:52597600-52607600	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr3:52597600-52608600	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr3:52597600-52611800	Weak transcription	Pancreas	Pancrea
45	chr3:52597600-52612000	Weak transcription	Brain Substantia Nigra	brain
46	chr3:52597600-52612000	Weak transcription	Right Ventricle	heart
47	chr3:52597600-52612400	Weak transcription	Colonic Mucosa	Colon
48	chr3:52597600-52612600	Weak transcription	Esophagus	oesophagus
49	chr3:52597600-52612600	Weak transcription	Rectal Smooth Muscle	rectum
50	chr3:52597800-52600000	Weak transcription	Brain Anterior Caudate	brain

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