Variant report

Variant	rs8906
Chromosome Location	chr3:52739520-52739521
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:192)
CpG islands
(count:61)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:192 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:52739505-52740396	SK-N-MC	brain:	n/a	n/a
2	POLR2A	chr3:52739337-52740585	K562	blood:	n/a	n/a
3	ZMIZ1	chr3:52739470-52740398	K562	blood:	n/a	n/a
4	POLR2A	chr3:52739403-52740552	GM12891	blood:	n/a	n/a
5	POLR2A	chr3:52739455-52740697	GM12891	blood:	n/a	n/a
6	POLR2A	chr3:52738427-52740420	HepG2	liver:	n/a	n/a
7	POLR2A	chr3:52739466-52740688	Hela-S3	cervix:	n/a	n/a
8	PAX5	chr3:52739449-52740497	GM12878	blood:	n/a	n/a
9	POLR2A	chr3:52739512-52741064	MCF10A-Er-Src	breast:	n/a	n/a
10	NANOG	chr3:52739509-52740090	H1-hESC	embryonic stem cell:	n/a	n/a
11	POLR2A	chr3:52739494-52740513	GM18526	blood:	n/a	n/a
12	RCOR1	chr3:52739506-52740375	K562	blood:	n/a	n/a
13	POLR2A	chr3:52739454-52740611	MCF-7	breast:	n/a	n/a
14	RCOR1	chr3:52739416-52740376	HepG2	liver:	n/a	n/a
15	YY1	chr3:52739370-52740681	SK-N-SH	brain:	n/a	n/a
16	POLR2A	chr3:52738761-52740726	K562	blood:	n/a	n/a
17	YY1	chr3:52739439-52740558	ECC-1	luminal epithelium:	n/a	n/a
18	POLR2A	chr3:52739478-52740379	PANC-1	pancreas:	n/a	n/a
19	MAX	chr3:52739341-52740434	NB4	blood:	n/a	n/a
20	YY1	chr3:52739445-52740559	HepG2	liver:	n/a	n/a
21	POLR2A	chr3:52739423-52740430	HCT-116	colon:	n/a	n/a
22	POLR2A	chr3:52739367-52740453	U87	brain:	n/a	n/a
23	POLR2A	chr3:52738437-52740442	HepG2	liver:	n/a	n/a
24	CREB1	chr3:52739514-52740523	H1-hESC	embryonic stem cell:	n/a	n/a
25	MAX	chr3:52739397-52740532	MCF-7	breast:	n/a	n/a
26	ETS1	chr3:52739497-52740263	GM12878	blood:	n/a	n/a
27	POLR2A	chr3:52739431-52740603	GM12892	blood:	n/a	n/a
28	HA-E2F1	chr3:52739506-52740327	Hela-S3	cervix:	n/a	n/a
29	POLR2A	chr3:52739364-52740826	GM18505	blood:	n/a	n/a
30	MAX	chr3:52738365-52740666	HepG2	liver:	n/a	chr3:52738688-52738697 chr3:52738689-52738696
31	MAX	chr3:52739463-52740520	K562	blood:	n/a	n/a
32	BCLAF1	chr3:52739493-52740920	GM12878	blood:	n/a	n/a
33	MAX	chr3:52738427-52740636	HepG2	liver:	n/a	chr3:52738688-52738697 chr3:52738689-52738696
34	YY1	chr3:52739394-52740604	GM12892	blood:	n/a	n/a
35	STAT5A	chr3:52738372-52740727	GM12878	blood:	n/a	chr3:52739025-52739037 chr3:52740096-52740120
36	ZNF143	chr3:52739440-52740440	GM12878	blood:	n/a	n/a
37	FOXM1	chr3:52739453-52740369	GM12878	blood:	n/a	n/a
38	EP300	chr3:52739297-52740284	GM12878	blood:	n/a	n/a
39	MXI1	chr3:52739474-52740513	HepG2	liver:	n/a	n/a
40	POLR2A	chr3:52739021-52740650	GM19193	blood:	n/a	n/a
41	POLR2A	chr3:52739508-52740645	GM12878	blood:	n/a	n/a
42	RUNX3	chr3:52739398-52740720	GM12878	blood:	n/a	n/a
43	TCF7L2	chr3:52739397-52740313	HCT-116	colon:	n/a	n/a
44	HEY1	chr3:52738445-52740459	HepG2	liver:	n/a	n/a
45	FOXM1	chr3:52739503-52740425	GM12878	blood:	n/a	n/a
46	YY1	chr3:52739436-52740503	K562	blood:	n/a	n/a
47	POLR2A	chr3:52739465-52740448	GM10847	blood:	n/a	n/a
48	TCF7L2	chr3:52738575-52740390	Hela-S3	cervix:	n/a	chr3:52738697-52738711
49	MYBL2	chr3:52739387-52740315	HepG2	liver:	n/a	n/a
50	TAF1	chr3:52739476-52740430	HepG2	liver:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:52739491-52739541	AG04450	lung:	fetal
2	chr3:52739491-52739541	Jurkat	blood:	n/a
3	chr3:52739491-52739541	GM19239	blood:	n/a
4	chr3:52739491-52739541	MCF10A-Er-Src	breast:	n/a
5	chr3:52739491-52739541	HepG2	liver:	n/a
6	chr3:52739491-52739541	SK-N-MC	brain:	n/a
7	chr3:52739491-52739541	Hela-S3	cervix:	n/a
8	chr3:52739491-52739541	HRE	kidney:	n/a
9	chr3:52739491-52739541	HCPEpiC	choroid plexus:	n/a
10	chr3:52739491-52739541	ECC-1	luminal epithelium:	n/a
11	chr3:52739491-52739541	SAEC	small airway:	n/a
12	chr3:52739491-52739541	BJ	skin:	n/a
13	chr3:52739491-52739541	T-47D	breast:	n/a
14	chr3:52739491-52739541	SK-N-SH_RA	brain:	n/a
15	chr3:52739491-52739541	LNCaP	prostate:	n/a
16	chr3:52739491-52739541	HMEC	breast:	n/a
17	chr3:52739491-52739541	HRPEpiC	eye:	n/a
18	chr3:52739491-52739541	CMK	blood:	n/a
19	chr3:52739491-52739541	GM06990	blood:	n/a
20	chr3:52739491-52739541	AG10803	skin:	n/a
21	chr3:52739491-52739541	HNPCEpiC	eye:	n/a
22	chr3:52739491-52739541	IMR90	lung:	fetal
23	chr3:52739491-52739541	HIPEpiC	eye:	n/a
24	chr3:52739491-52739541	HCM	heart:	n/a
25	chr3:52739491-52739541	NHDF-neo	bronchial:	n/a
26	chr3:52739491-52739541	NH-A	brain:	n/a
27	chr3:52739491-52739541	HRCEpiC	kidney:	n/a
28	chr3:52739491-52739541	RPTEC	kidney:	n/a
29	chr3:52739491-52739541	GM12878	blood:	n/a
30	chr3:52739491-52739541	NT2-D1	testis:	n/a
31	chr3:52739491-52739541	Hepatocyte	liver:	n/a
32	chr3:52739491-52739541	PrEC	prostate:	n/a
33	chr3:52739491-52739541	HCF	heart:	n/a
34	chr3:52739491-52739541	A549	lung:	n/a
35	chr3:52739491-52739541	AG09309	skin:	n/a
36	chr3:52739491-52739541	AoSMC	blood vessel:	n/a
37	chr3:52739491-52739541	PFSK-1	brain:	n/a
38	chr3:52739491-52739541	ProgFib	skin:	n/a
39	chr3:52739491-52739541	HCT-116	colon:	n/a
40	chr3:52739491-52739541	GM12892	blood:	n/a
41	chr3:52739491-52739541	MCF-7	breast:	n/a
42	chr3:52739491-52739541	HEEpiC	esophagus:	n/a
43	chr3:52739491-52739541	AG04449	skin:	fetal
44	chr3:52739491-52739541	NHBE	bronchial:	n/a
45	chr3:52739491-52739541	HEK293	kidney:	embryo
46	chr3:52739491-52739541	GM12891	blood:	n/a
47	chr3:52739491-52739541	AG09319	gingival:	n/a
48	chr3:52739491-52739541	H1-hESC	embryonic stem cell:	embryo
49	chr3:52739491-52739541	HL-60	blood:	n/a
50	chr3:52739491-52739541	K562	blood:	n/a

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:52718628..52724105-chr3:52738117..52743946,12	MCF-7	breast:
2	chr3:52567128..52569011-chr3:52738941..52741649,3	K562	blood:
3	chr3:52567315..52569798-chr3:52739141..52741499,3	MCF-7	breast:
4	chr3:52733044..52735275-chr3:52738797..52740602,3	MCF-7	breast:
5	chr3:52570222..52571915-chr3:52739151..52740818,2	MCF-7	breast:
6	chr3:52731236..52732930-chr3:52738101..52740472,2	MCF-7	breast:
7	chr3:52486786..52490623-chr3:52738506..52740742,3	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GLT8D1-1	chr3:52739463-52740048	NONHSAT089951

No data

Variant related genes	Relation type
SPCS1	TF binding region
GLT8D1	TF binding region
GLT8D1	CpG island
SPCS1	CpG island
ENSG00000010322	Chromatin interaction
ENSG00000168268	Chromatin interaction
ENSG00000252787	Chromatin interaction
ENSG00000163938	Chromatin interaction
ENSG00000114854	Chromatin interaction
ENSG00000168273	Chromatin interaction
ENSG00000212493	Chromatin interaction
ENSG00000016864	Chromatin interaction
ENSG00000163939	Chromatin interaction

Extended variants
information (count: 274 )
Associated
traits (count: 19 )

rSNPs within LD-proxies of this variant (count:273)

rs_ID	r²[population]
rs1010552	0.84[CHB][hapmap]
rs1010553	0.82[CHB][hapmap];0.81[CHD][hapmap]
rs1010554	0.91[CHB][hapmap];0.84[CHD][hapmap]
rs1014969	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.83[ASN][1000 genomes]
rs1029871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1042779	0.83[CHB][hapmap];0.86[JPT][hapmap];0.84[TSI][hapmap]
rs10433615	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10510760	1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.90[ASN][1000 genomes]
rs1075653	0.94[GIH][hapmap];0.86[JPT][hapmap]
rs1076425	0.94[GIH][hapmap];0.86[JPT][hapmap]
rs10780035	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10865973	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10865974	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10933	0.91[ASN][1000 genomes]
rs1108842	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap]
rs11130307	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11130308	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11130310	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11130311	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11130312	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11130313	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11130314	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11130315	0.85[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.96[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11130317	0.85[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.96[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11130318	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11130319	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11130321	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11130323	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11130324	0.81[ASN][1000 genomes]
rs11130325	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11130326	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11130327	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11177	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11235	0.95[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs1133415	0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap]
rs11708075	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11709448	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11711421	0.95[JPT][hapmap]
rs11714030	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11714088	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11714419	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11714565	0.88[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11716747	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11717043	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11717836	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11718420	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11718509	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11719514	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11720159	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11720243	0.91[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11720432	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12486554	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12486847	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12487445	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12487591	0.85[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.96[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.81[YRI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12488461	0.85[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.86[LWK][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];0.81[YRI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12488527	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12489828	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12493107	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12496476	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12496634	0.85[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.96[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12497998	0.91[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12498066	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12629699	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12629701	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12632265	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12632381	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12635140	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13060675	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13061253	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13061423	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13063160	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap]
rs13064064	0.85[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.96[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13065019	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13065851	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13068293	0.85[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.96[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13069481	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13071584	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13074853	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13076193	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13078422	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13079063	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13081028	0.86[CHB][hapmap];0.86[CHD][hapmap]
rs13081031	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13081155	0.91[ASN][1000 genomes]
rs13082208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13082960	0.85[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.95[MEX][hapmap];0.82[MKK][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13083798	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs13085331	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13085775	0.91[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.89[TSI][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13085895	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13086297	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13086898	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13087772	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13095332	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13098776	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13303	0.95[CHB][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap]
rs1468638	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1561337	0.85[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.96[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17052256	0.91[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap]
rs17052259	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17264436	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1866268	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1961958	0.85[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap]
rs1961959	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs2015971	0.81[YRI][hapmap]
rs2019065	0.83[CHB][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap]
rs2028216	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2071506	0.94[GIH][hapmap];0.86[JPT][hapmap]
rs2071507	0.91[JPT][hapmap]
rs2071508	0.94[GIH][hapmap];0.86[JPT][hapmap]
rs2072390	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2079929	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2083180	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2109634	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2118540	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2159644	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2164884	0.84[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.96[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2164885	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2230534	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2230535	0.85[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.96[MEX][hapmap];0.87[MKK][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2239549	1.00[GIH][hapmap];0.86[JPT][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes]
rs2239550	0.80[AMR][1000 genomes]
rs2239551	0.82[CEU][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes]
rs2239699	0.84[JPT][hapmap]
rs2240919	0.86[JPT][hapmap]
rs2240920	0.86[GIH][hapmap];0.91[JPT][hapmap]
rs2251219	0.85[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.96[MEX][hapmap];0.87[MKK][hapmap];0.98[TSI][hapmap];0.81[YRI][hapmap]
rs2268023	0.86[JPT][hapmap]
rs2268024	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2268025	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2268026	0.85[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.91[MEX][hapmap];0.87[MKK][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2268027	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2270197	0.86[JPT][hapmap]
rs2276824	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs2286798	0.94[GIH][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];0.87[TSI][hapmap]
rs2286800	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2289247	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2289249	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap]
rs2289250	0.85[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.96[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2300149	0.94[GIH][hapmap];0.86[JPT][hapmap];0.89[TSI][hapmap];0.80[AMR][1000 genomes]
rs2336145	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2336146	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2336148	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2336149	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2336542	0.95[CEU][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2336545	0.85[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.96[MEX][hapmap];0.87[MKK][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2535629	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs2577831	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs2590838	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs2590846	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2878628	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap]
rs2878726	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs33967311	0.85[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34017441	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34115864	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34157897	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34168767	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34173654	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34215106	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34291015	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34341238	0.87[ASN][1000 genomes]
rs34537256	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34610142	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34610878	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34739010	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34754793	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34757451	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34918356	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34954168	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35107891	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35211965	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35212380	0.87[ASN][1000 genomes]
rs35249778	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35315313	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35409678	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35526119	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35976524	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3617	0.82[CHB][hapmap]
rs3733039	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3733041	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3733045	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3755798	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3755806	0.85[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.96[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3774349	0.93[ASN][1000 genomes]
rs3774354	1.00[GIH][hapmap];0.86[JPT][hapmap];0.81[LWK][hapmap];0.96[MEX][hapmap];0.87[TSI][hapmap];0.81[YRI][hapmap];0.84[AMR][1000 genomes]
rs3774355	0.81[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs3774365	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3774366	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3796353	0.91[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap]
rs3852066	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4130905	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4282054	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs4336110	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4435633	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4475032	0.95[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.96[MEX][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];0.81[YRI][hapmap]
rs4687546	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4687547	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4687548	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4687549	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4687550	0.86[JPT][hapmap]
rs4687551	0.94[GIH][hapmap];0.81[JPT][hapmap]
rs4687625	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4687626	0.95[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.96[MEX][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];0.81[YRI][hapmap]
rs4687629	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4687630	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4687633	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4687636	0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4687637	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4687638	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4687639	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4687644	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4687648	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4687650	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62253700	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62253703	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62253733	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62255362	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62255364	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62255371	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62255396	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6414569	0.82[ASN][1000 genomes]
rs6445528	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.87[TSI][hapmap]
rs6445529	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6445531	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6445534	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6445535	0.91[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6617	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67539070	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6762457	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6762813	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6768697	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6770463	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6778329	0.90[JPT][hapmap]
rs6778735	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs6778844	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap]
rs678	0.91[JPT][hapmap];0.82[AMR][1000 genomes]
rs6786043	0.91[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap]
rs6786919	0.91[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap]
rs6787154	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6790330	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6796726	0.90[ASN][1000 genomes]
rs6798246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs68021750	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6803012	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6804145	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6805156	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6976	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7611731	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7612511	0.82[ASN][1000 genomes]
rs7614498	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7614981	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs7620039	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7622694	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7623199	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7624716	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7625743	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7628578	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7638162	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7638808	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.87[TSI][hapmap]
rs7642198	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7646741	0.81[ASN][1000 genomes]
rs7651709	0.95[LWK][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap]
rs7652191	0.91[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7653028	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs767418	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9324	0.94[GIH][hapmap];0.86[JPT][hapmap]
rs9714129	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9853056	0.86[CHB][hapmap];0.86[CHD][hapmap]
rs9879090	1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs9881468	0.97[GIH][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap]
rs9917834	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs998909	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv984563	chr3:52516115-52867075	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

mRNA abundance (count:19)

SNP	Gene	Cis/trans	Tissue	Source
rs8906	ITIH4	cis	lymphoblastoid	seeQTL
rs8906	NT5DC2	cis	lymphoblastoid	seeQTL
rs8906	ITIH4	cis	parietal	SCAN
rs8906	SPCS1	cis	parietal	SCAN
rs8906	TMEM110	cis	cerebellum	SCAN
rs8906	TMEM110	cis	parietal	SCAN
rs8906	GNL3	cis	parietal	SCAN
rs8906	NEK4	cis	cerebellum	SCAN
rs8906	NT5DC2	Cis_1M	lymphoblastoid	RTeQTL
rs8906	NEK4	cis	parietal	SCAN
rs8906	PBRM1	cis	Thyroid	GTEx
rs8906	SEMA3G	cis	parietal	SCAN
rs8906	RBM6	cis	cerebellum	SCAN
rs8906	NT5DC2	cis	multi-tissue	Pritchard
rs8906	NT5DC2	cis	Skin Sun Exposed Lower leg	GTEx
rs8906	GLT8D1	cis	lymphoblastoid	seeQTL
rs8906	RBM6	cis	parietal	SCAN
rs8906	GNL3	cis	cerebellum	SCAN
rs8906	GLT8D1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52737600-52739600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
2	chr3:52737800-52740800	Active TSS	Ovary	ovary
3	chr3:52737800-52741400	Active TSS	NHLF	lung
4	chr3:52737800-52741600	Active TSS	Colonic Mucosa	Colon
5	chr3:52738000-52741400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:52738000-52741400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:52738000-52741600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:52738200-52740200	Active TSS	HepG2	liver
9	chr3:52738200-52740800	Active TSS	NH-A	brain
10	chr3:52738200-52741400	Active TSS	NHDF-Ad	bronchial
11	chr3:52738200-52741800	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr3:52738400-52739600	Flanking Active TSS	Liver	Liver
13	chr3:52738400-52740600	Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr3:52738400-52741600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:52738400-52741800	Active TSS	HUES64 Cell Line	embryonic stem cell
16	chr3:52738600-52739600	Flanking Active TSS	Primary B cells from cord blood	blood
17	chr3:52738600-52739600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
18	chr3:52738600-52739600	Flanking Active TSS	Adipose Nuclei	Adipose
19	chr3:52738600-52741000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
20	chr3:52738600-52741200	Active TSS	Small Intestine	intestine
21	chr3:52738600-52741400	Active TSS	Aorta	Aorta
22	chr3:52738800-52739600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
23	chr3:52738800-52739600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
24	chr3:52738800-52739600	Flanking Active TSS	Primary hematopoietic stem cells	blood
25	chr3:52738800-52739600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
26	chr3:52738800-52739600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
27	chr3:52738800-52741000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
28	chr3:52738800-52741200	Active TSS	ES-I3 Cell Line	embryonic stem cell
29	chr3:52738800-52741200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr3:52738800-52741200	Active TSS	Muscle Satellite Cultured Cells	--
31	chr3:52738800-52741200	Active TSS	Gastric	stomach
32	chr3:52738800-52741200	Active TSS	Psoas Muscle	Psoas
33	chr3:52738800-52741400	Active TSS	HUES48 Cell Line	embryonic stem cell
34	chr3:52738800-52741600	Active TSS	A549	lung
35	chr3:52739000-52739800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr3:52739000-52740400	Active TSS	Brain Inferior Temporal Lobe	brain
37	chr3:52739000-52740600	Active TSS	Breast Myoepithelial Primary Cells	Breast
38	chr3:52739000-52740600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr3:52739000-52740600	Active TSS	Fetal Stomach	stomach
40	chr3:52739000-52740600	Active TSS	Placenta Amnion	Placenta Amnion
41	chr3:52739000-52740600	Active TSS	Rectal Smooth Muscle	rectum
42	chr3:52739000-52740800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr3:52739000-52740800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr3:52739000-52740800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr3:52739000-52740800	Active TSS	Brain Anterior Caudate	brain
46	chr3:52739000-52740800	Active TSS	Colon Smooth Muscle	Colon
47	chr3:52739000-52740800	Active TSS	Duodenum Smooth Muscle	Duodenum
48	chr3:52739000-52740800	Active TSS	Fetal Lung	lung
49	chr3:52739000-52740800	Active TSS	Sigmoid Colon	Sigmoid Colon
50	chr3:52739000-52740800	Active TSS	HUVEC	blood vessel

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Variant report

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