Variant report

Variant	rs4282054
Chromosome Location	chr3:52566065-52566066
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:22)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:22 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:52565978-52567545	U87	brain:	n/a	n/a
2	WRNIP1	chr3:52566009-52566298	GM12878	blood:	n/a	n/a
3	POLR2A	chr3:52565799-52567472	HepG2	liver:	n/a	n/a
4	POLR2A	chr3:52564728-52566280	HepG2	liver:	n/a	n/a
5	POLR2A	chr3:52565912-52566180	HepG2	liver:	n/a	n/a
6	ZNF263	chr3:52565804-52566531	HEK293-T-REx	kidney:	n/a	n/a
7	POLR2A	chr3:52565761-52567641	U87	brain:	n/a	n/a
8	POLR2A	chr3:52565766-52567830	GM12878	blood:	n/a	n/a
9	POLR2A	chr3:52563182-52567206	K562	blood:	n/a	n/a
10	POLR2A	chr3:52560598-52572342	HepG2	liver:	n/a	n/a
11	POLR2A	chr3:52565765-52567056	PFSK-1	brain:	n/a	n/a
12	POLR2A	chr3:52564917-52567026	SK-N-MC	brain:	n/a	n/a
13	POLR2A	chr3:52565713-52566270	GM12878	blood:	n/a	n/a
14	POLR2A	chr3:52564832-52568664	K562	blood:	n/a	n/a
15	MAZ	chr3:52565988-52566130	K562	blood:	n/a	n/a
16	POLR2A	chr3:52565952-52566179	K562	blood:	n/a	n/a
17	MXI1	chr3:52566005-52569515	SK-N-SH	brain:	n/a	chr3:52566058-52566067
18	POLR2A	chr3:52566055-52566075	MCF-7	breast:	n/a	n/a
19	POLR2A	chr3:52565701-52566211	GM12878	blood:	n/a	n/a
20	POLR2A	chr3:52565227-52568334	HUVEC	blood vessel:	n/a	n/a
21	MAZ	chr3:52565612-52569076	IMR90	lung:	n/a	chr3:52566595-52566603
22	POLR2A	chr3:52564773-52569282	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:52489605..52491332-chr3:52564945..52566721,2	K562	blood:
2	chr3:52508946..52511340-chr3:52565152..52566782,2	MCF-7	breast:
3	chr3:52504515..52506973-chr3:52565446..52568302,2	MCF-7	breast:
4	chr3:52555579..52557218-chr3:52564676..52566664,2	MCF-7	breast:
5	chr3:52311763..52314254-chr3:52566006..52568592,3	K562	blood:
6	chr3:52487897..52490713-chr3:52565636..52568320,3	K562	blood:

No data

Variant related genes	Relation type
NT5DC2	TF binding region
SMIM4	TF binding region
ENSG00000010327	Chromatin interaction
ENSG00000114854	Chromatin interaction
ENSG00000164091	Chromatin interaction
ENSG00000010322	Chromatin interaction

Extended variants
information (count: 133 )
Associated
traits (count: 19 )

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs1010552	0.90[CHB][hapmap]
rs1010553	0.85[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.83[EUR][1000 genomes]
rs1010554	0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10510760	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs10780035	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs10865973	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10865974	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap]
rs1108842	0.95[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.87[LWK][hapmap];0.89[MEX][hapmap];0.88[TSI][hapmap]
rs11130310	0.95[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap];0.81[LWK][hapmap]
rs11130312	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11130315	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs11130317	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs11177	0.95[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap]
rs11235	0.91[CHB][hapmap];0.89[JPT][hapmap]
rs1133415	0.95[CHB][hapmap];0.90[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs11709284	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11711421	0.83[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs11714419	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs11714565	0.95[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap]
rs11716747	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap]
rs11720159	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs11720243	0.95[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap]
rs12487445	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs12487591	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs12488461	0.91[CHB][hapmap];0.84[CHD][hapmap];0.86[JPT][hapmap]
rs12489732	0.93[ASN][1000 genomes]
rs12489828	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12496634	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs12635140	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.83[LWK][hapmap]
rs13059862	0.89[ASN][1000 genomes]
rs13060048	0.89[ASN][1000 genomes]
rs13063160	0.91[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs13064064	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs13068293	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs13076398	0.91[ASN][1000 genomes]
rs13079063	0.95[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap];0.81[LWK][hapmap]
rs13081028	0.91[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13083798	0.95[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.87[LWK][hapmap];0.89[MEX][hapmap];0.88[TSI][hapmap]
rs13085775	0.86[CHB][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap];0.81[LWK][hapmap]
rs13085895	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs13094915	0.81[CHB][hapmap]
rs13303	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];0.89[MEX][hapmap];0.99[MKK][hapmap];0.97[TSI][hapmap];0.80[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13621	0.93[ASN][1000 genomes]
rs1561337	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs1570	0.91[ASN][1000 genomes]
rs17052256	0.95[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs17052259	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs17264436	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1821879	0.87[ASN][1000 genomes]
rs1866268	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap]
rs1961958	0.91[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs1961959	0.86[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs2015971	0.82[CHB][hapmap]
rs2028216	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs2079929	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap]
rs2083180	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap]
rs2118540	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs2164884	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2164885	0.95[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.81[LWK][hapmap]
rs2251219	0.95[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs2276824	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2289247	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap]
rs2289249	0.95[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs2289250	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs2336146	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs2336149	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap]
rs2577831	0.91[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.93[MKK][hapmap];0.85[TSI][hapmap];0.96[YRI][hapmap]
rs2590838	0.82[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.85[MKK][hapmap];0.90[TSI][hapmap];0.96[YRI][hapmap];0.82[ASN][1000 genomes]
rs28661185	0.87[ASN][1000 genomes]
rs2878628	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs33964154	0.91[ASN][1000 genomes]
rs33967311	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs34005367	0.93[ASN][1000 genomes]
rs34017441	0.95[CHB][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap]
rs35526119	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap]
rs3733039	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs3733041	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap]
rs3733045	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap]
rs3755798	0.91[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap]
rs3755806	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs3774365	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs3774366	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap]
rs3796353	0.95[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs3852066	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap]
rs4234633	0.88[ASN][1000 genomes]
rs4434138	0.87[ASN][1000 genomes]
rs4475032	1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs4687548	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs4687624	0.88[ASN][1000 genomes]
rs4687625	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs4687626	1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs4687629	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs4687638	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs62256903	0.91[ASN][1000 genomes]
rs6445528	1.00[CHB][hapmap];0.93[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];0.92[ASN][1000 genomes]
rs6445534	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs6617	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs66782572	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66824127	0.93[EUR][1000 genomes]
rs67409736	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6762813	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs6778735	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6778844	0.95[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs6786043	0.95[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];0.86[ASN][1000 genomes]
rs6786919	0.95[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs6788887	0.89[ASN][1000 genomes]
rs6788993	0.89[ASN][1000 genomes]
rs6798246	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs6804145	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap]
rs6805156	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs6976	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs731831	0.86[CHB][hapmap];0.83[CHD][hapmap]
rs7611731	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap]
rs7614981	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.90[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7622694	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap]
rs7624716	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap]
rs7636227	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7638808	1.00[CHB][hapmap];0.93[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];0.92[ASN][1000 genomes]
rs7652191	0.95[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap]
rs8906	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs9758945	0.85[ASN][1000 genomes]
rs9853056	1.00[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.80[LWK][hapmap];0.89[MEX][hapmap];0.87[MKK][hapmap];0.87[TSI][hapmap]
rs9879090	1.00[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876789	chr3:52247110-52575831	Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
2	nsv834697	chr3:52400578-52579417	Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv876792	chr3:52430526-52575831	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv876793	chr3:52450043-52584787	Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	esv1818902	chr3:52481406-52572056	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	nsv984563	chr3:52516115-52867075	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
7	nsv590305	chr3:52535586-52569480	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
8	nsv590307	chr3:52540773-52572056	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
9	nsv876795	chr3:52544470-52572056	Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
10	nsv876796	chr3:52549676-52572056	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

mRNA abundance (count:19)

SNP	Gene	Cis/trans	Tissue	Source
rs4282054	NT5DC2	Cis_1M	lymphoblastoid	RTeQTL
rs4282054	SEMA3G	cis	parietal	SCAN
rs4282054	QARS	cis	parietal	SCAN
rs4282054	FLJ12442	cis	multi-tissue	Pritchard
rs4282054	RBM6	cis	cerebellum	SCAN
rs4282054	NDUFAF3	cis	parietal	SCAN
rs4282054	NT5DC2	cis	cerebellum	SCAN
rs4282054	NEK4	cis	cerebellum	SCAN
rs4282054	GNL3	cis	parietal	SCAN
rs4282054	GLYCTK	cis	parietal	SCAN
rs4282054	NT5DC2	cis	lymphoblastoid	seeQTL
rs4282054	NT5DC2	cis	Lymphoblastoid	GTEx
rs4282054	NT5DC2	cis	multi-tissue	Pritchard
rs4282054	SPCS1	cis	parietal	SCAN
rs4282054	NEK4	cis	parietal	SCAN
rs4282054	GNL3	cis	cerebellum	SCAN
rs4282054	NT5DC2	cis	Skin Sun Exposed Lower leg	GTEx
rs4282054	PBRM1	cis	Artery Tibial	GTEx
rs4282054	GLT8D1	cis	lymphoblastoid	seeQTL

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52550600-52566600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr3:52552800-52566200	Weak transcription	Brain Angular Gyrus	brain
3	chr3:52554800-52567200	Weak transcription	Aorta	Aorta
4	chr3:52556800-52566400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:52558200-52566200	Genic enhancers	Fetal Lung	lung
6	chr3:52558400-52566200	Weak transcription	Fetal Kidney	kidney
7	chr3:52558400-52566200	Genic enhancers	Fetal Muscle Trunk	muscle
8	chr3:52558400-52567000	Weak transcription	Small Intestine	intestine
9	chr3:52558600-52566200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:52558600-52566600	Weak transcription	Colon Smooth Muscle	Colon
11	chr3:52558800-52566400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr3:52558800-52566600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr3:52559000-52566800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr3:52559800-52566400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr3:52560200-52566600	Weak transcription	Liver	Liver
16	chr3:52560600-52566800	Weak transcription	HSMMtube	muscle
17	chr3:52562400-52566400	Weak transcription	Thymus	Thymus
18	chr3:52562600-52566600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr3:52562800-52566600	Enhancers	Fetal Heart	heart
20	chr3:52562800-52566600	Weak transcription	Gastric	stomach
21	chr3:52562800-52566600	Enhancers	Right Atrium	heart
22	chr3:52563000-52566800	Enhancers	Lung	lung
23	chr3:52563200-52566400	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr3:52563200-52566600	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr3:52563400-52566200	Enhancers	Adipose Nuclei	Adipose
26	chr3:52563400-52566200	Weak transcription	Fetal Intestine Large	intestine
27	chr3:52563400-52566200	Genic enhancers	Fetal Stomach	stomach
28	chr3:52563400-52566600	Enhancers	Left Ventricle	heart
29	chr3:52563400-52566600	Enhancers	Right Ventricle	heart
30	chr3:52563600-52566400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr3:52563600-52566600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr3:52563800-52566200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr3:52563800-52566200	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr3:52563800-52566200	Enhancers	NHDF-Ad	bronchial
35	chr3:52563800-52566400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr3:52563800-52566600	Enhancers	Fetal Brain Male	brain
37	chr3:52564000-52566600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr3:52564000-52566600	Enhancers	Placenta	Placenta
39	chr3:52564000-52566800	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr3:52564000-52567200	Enhancers	Spleen	Spleen
41	chr3:52564400-52566800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr3:52564600-52566200	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr3:52564600-52566200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr3:52564800-52566200	Enhancers	Muscle Satellite Cultured Cells	--
45	chr3:52564800-52566600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr3:52565200-52566200	Enhancers	Brain Anterior Caudate	brain
47	chr3:52565200-52566400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr3:52565400-52566200	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
49	chr3:52565400-52566200	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr3:52565400-52566200	Genic enhancers	Fetal Intestine Small	intestine

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