Variant report

Variant	rs1866268
Chromosome Location	chr3:52719398-52719399
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:272)
CpG islands
(count:61)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:272 , 50 per page) page: 1 2 3 4 5 6

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HEY1	chr3:52719254-52720596	HepG2	liver:	n/a	n/a
2	POLR2A	chr3:52719398-52720386	A549	lung:	n/a	n/a
3	MXI1	chr3:52717818-52721863	SK-N-SH	brain:	n/a	n/a
4	YY1	chr3:52719269-52719602	H1-hESC	embryonic stem cell:	n/a	n/a
5	TAF1	chr3:52719320-52719632	GM12891	blood:	n/a	n/a
6	MAX	chr3:52719369-52720661	K562	blood:	n/a	n/a
7	CREB1	chr3:52719248-52720777	HepG2	liver:	n/a	n/a
8	JUN	chr3:52719081-52720693	K562	blood:	n/a	chr3:52720134-52720143
9	POLR2A	chr3:52719217-52720995	Hela-S3	cervix:	n/a	n/a
10	CREB1	chr3:52719310-52720525	GM12878	blood:	n/a	n/a
11	TBP	chr3:52718933-52720646	GM12878	blood:	n/a	n/a
12	MXI1	chr3:52719206-52722054	IMR90	lung:	n/a	n/a
13	POLR2A	chr3:52719219-52720858	HL-60	blood:	n/a	n/a
14	MAX	chr3:52719313-52720694	HepG2	liver:	n/a	n/a
15	POLR2A	chr3:52719327-52720646	HCT-116	colon:	n/a	n/a
16	RFX5	chr3:52719380-52719581	HepG2	liver:	n/a	n/a
17	POLR2A	chr3:52718446-52723739	IMR90	lung:	n/a	n/a
18	STAT5A	chr3:52719267-52720912	GM12878	blood:	n/a	n/a
19	POLR2A	chr3:52719241-52720951	U87	brain:	n/a	n/a
20	UBTF	chr3:52719318-52720372	K562	blood:	n/a	n/a
21	POLR2A	chr3:52719329-52721259	HepG2	liver:	n/a	n/a
22	POLR2A	chr3:52719170-52723469	H1-hESC	embryonic stem cell:	n/a	n/a
23	ZEB1	chr3:52719369-52720273	GM12878	blood:	n/a	n/a
24	TAF1	chr3:52719268-52720508	ECC-1	luminal epithelium:	n/a	n/a
25	POLR2A	chr3:52719314-52720507	MCF-7	breast:	n/a	n/a
26	POLR2A	chr3:52719130-52720824	U87	brain:	n/a	n/a
27	BHLHE40	chr3:52719302-52720749	GM12878	blood:	n/a	n/a
28	ELF1	chr3:52719277-52720552	GM12878	blood:	n/a	chr3:52720010-52720019
29	POLR2A	chr3:52718374-52724293	MCF10A-Er-Src	breast:	n/a	n/a
30	CTBP2	chr3:52719218-52720251	H1-hESC	embryonic stem cell:	n/a	n/a
31	MXI1	chr3:52719313-52720573	HepG2	liver:	n/a	n/a
32	SIN3A	chr3:52719091-52721010	H1-hESC	embryonic stem cell:	n/a	chr3:52719716-52719729
33	BCLAF1	chr3:52719211-52720668	GM12878	blood:	n/a	chr3:52719712-52719725 chr3:52719935-52719948 chr3:52719439-52719448
34	POLR2A	chr3:52719330-52720633	GM12878	blood:	n/a	n/a
35	POLR2A	chr3:52719328-52720571	GM19193	blood:	n/a	n/a
36	POLR2A	chr3:52719343-52721084	K562	blood:	n/a	n/a
37	POLR2A	chr3:52719347-52720476	GM10847	blood:	n/a	n/a
38	TCF3	chr3:52719378-52720192	GM12878	blood:	n/a	chr3:52719564-52719580
39	SIN3AK20	chr3:52719298-52720643	MCF-7	breast:	n/a	n/a
40	MAX	chr3:52719386-52720559	K562	blood:	n/a	n/a
41	POLR2A	chr3:52719265-52720404	ProgFib	skin:	n/a	n/a
42	EP300	chr3:52719303-52720415	GM12878	blood:	n/a	n/a
43	MYC	chr3:52719346-52720710	K562	blood:	n/a	n/a
44	BCL3	chr3:52719313-52719874	GM12878	blood:	n/a	chr3:52719712-52719725 chr3:52719439-52719448
45	MAX	chr3:52719391-52720628	Hela-S3	cervix:	n/a	n/a
46	YY1	chr3:52719311-52720315	GM12878	blood:	n/a	n/a
47	SIN3AK20	chr3:52719302-52720549	PANC-1	pancreas:	n/a	n/a
48	POLR2A	chr3:52719322-52720556	MCF-7	breast:	n/a	n/a
49	POLR2A	chr3:52719342-52720593	ECC-1	luminal epithelium:	n/a	n/a
50	MAX	chr3:52719181-52720758	ECC-1	luminal epithelium:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:52719354-52719404	U87	brain:	n/a
2	chr3:52719354-52719404	SKMC	muscle:	n/a
3	chr3:52719354-52719404	SK-N-MC	brain:	n/a
4	chr3:52719354-52719404	AG04449	skin:	fetal
5	chr3:52719354-52719404	Jurkat	blood:	n/a
6	chr3:52719354-52719404	BE2_C	brain:	n/a
7	chr3:52719354-52719404	HL-60	blood:	n/a
8	chr3:52719354-52719404	HCT-116	colon:	n/a
9	chr3:52719354-52719404	HCF	heart:	n/a
10	chr3:52719354-52719404	GM19239	blood:	n/a
11	chr3:52719354-52719404	GM12891	blood:	n/a
12	chr3:52719354-52719404	PFSK-1	brain:	n/a
13	chr3:52719354-52719404	PANC-1	pancreas:	n/a
14	chr3:52719354-52719404	HCM	heart:	n/a
15	chr3:52719354-52719404	CMK	blood:	n/a
16	chr3:52719354-52719404	AG09309	skin:	n/a
17	chr3:52719354-52719404	NT2-D1	testis:	n/a
18	chr3:52719354-52719404	Hela-S3	cervix:	n/a
19	chr3:52719354-52719404	ProgFib	skin:	n/a
20	chr3:52719354-52719404	LNCaP	prostate:	n/a
21	chr3:52719354-52719404	HepG2	liver:	n/a
22	chr3:52719354-52719404	HRE	kidney:	n/a
23	chr3:52719354-52719404	MCF10A-Er-Src	breast:	n/a
24	chr3:52719354-52719404	HCPEpiC	choroid plexus:	n/a
25	chr3:52719354-52719404	GM12892	blood:	n/a
26	chr3:52719354-52719404	Hepatocyte	liver:	n/a
27	chr3:52719354-52719404	AG09319	gingival:	n/a
28	chr3:52719354-52719404	NHBE	bronchial:	n/a
29	chr3:52719354-52719404	RPTEC	kidney:	n/a
30	chr3:52719354-52719404	Caco-2	colon:	n/a
31	chr3:52719354-52719404	PrEC	prostate:	n/a
32	chr3:52719354-52719404	HRCEpiC	kidney:	n/a
33	chr3:52719354-52719404	GM12878	blood:	n/a
34	chr3:52719354-52719404	SK-N-SH	brain:	n/a
35	chr3:52719354-52719404	HIPEpiC	eye:	n/a
36	chr3:52719354-52719404	T-47D	breast:	n/a
37	chr3:52719354-52719404	HEEpiC	esophagus:	n/a
38	chr3:52719354-52719404	HEK293	kidney:	embryo
39	chr3:52719354-52719404	HRPEpiC	eye:	n/a
40	chr3:52719354-52719404	NH-A	brain:	n/a
41	chr3:52719354-52719404	AoSMC	blood vessel:	n/a
42	chr3:52719354-52719404	MCF-7	breast:	n/a
43	chr3:52719354-52719404	NB4	blood:	n/a
44	chr3:52719354-52719404	HPAEpiC	pulmonary alveolar:	n/a
45	chr3:52719354-52719404	HUVEC	blood vessel:	n/a
46	chr3:52719354-52719404	HMEC	breast:	n/a
47	chr3:52719354-52719404	K562	blood:	n/a
48	chr3:52719354-52719404	HAEpiC	amniotic membrane:	n/a
49	chr3:52719354-52719404	BJ	skin:	n/a
50	chr3:52719354-52719404	SK-N-SH_RA	brain:	n/a

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:52487997..52491865-chr3:52718755..52722667,5	MCF-7	breast:
2	chr3:52567553..52570571-chr3:52718365..52721514,3	MCF-7	breast:
3	chr11:65265193..65266115-chr3:52718600..52719591,2	Hela-S3	cervix:
4	chr3:52566406..52569677-chr3:52718507..52721358,5	MCF-7	breast:
5	chr3:52443115..52446014-chr3:52718098..52719635,2	K562	blood:
6	chr3:52452815..52455679-chr3:52718724..52720785,2	MCF-7	breast:
7	chr3:52568115..52572187-chr3:52717267..52721555,8	K562	blood:
8	chr17:7475855..7476647-chr3:52719093..52720044,2	Hela-S3	cervix:
9	chr3:52567779..52572340-chr3:52718708..52722750,6	K562	blood:
10	chr3:52712073..52717938-chr3:52718038..52722104,14	K562	blood:
11	chr3:52492633..52495296-chr3:52719362..52721051,2	MCF-7	breast:
12	chr3:52718628..52724105-chr3:52738117..52743946,12	MCF-7	breast:
13	chr3:52718708..52722190-chr3:52722401..52727615,8	MCF-7	breast:
14	chr3:52642339..52643982-chr3:52719145..52721917,2	MCF-7	breast:
15	chr3:52719354..52720004-chr7:104653026..104653664,2	Hela-S3	cervix:
16	chr10:98346445..98347105-chr3:52719196..52720083,2	Hela-S3	cervix:
17	chr3:52718552..52720204-chr3:53288548..53290177,2	K562	blood:

No data

Variant related genes	Relation type
GNL3	TF binding region
ENSG00000252787	TF binding region
SNORD19	TF binding region
ENSG00000252787	CpG island
SNORD19	CpG island
GNL3	CpG island
ENSG00000252787	Chromatin interaction
ENSG00000010318	Chromatin interaction
ENSG00000163930	Chromatin interaction
ENSG00000077147	Chromatin interaction
ENSG00000212452	Chromatin interaction
ENSG00000168268	Chromatin interaction
ENSG00000228393	Chromatin interaction
ENSG00000161960	Chromatin interaction
ENSG00000010322	Chromatin interaction
ENSG00000168273	Chromatin interaction
ENSG00000163938	Chromatin interaction
ENSG00000238862	Chromatin interaction
ENSG00000163931	Chromatin interaction
ENSG00000251562	Chromatin interaction
ENSG00000114902	Chromatin interaction
ENSG00000270117	Chromatin interaction
ENSG00000163939	Chromatin interaction
ENSG00000222345	Chromatin interaction
ENSG00000212493	Chromatin interaction
ENSG00000114854	Chromatin interaction
ENSG00000016864	Chromatin interaction

Extended variants
information (count: 280 )
Associated
traits (count: 20 )

rSNPs within LD-proxies of this variant (count:279)

rs_ID	r²[population]
rs1010552	0.84[CHB][hapmap]
rs1010553	0.82[CHB][hapmap];0.81[CHD][hapmap]
rs1010554	0.91[CHB][hapmap];0.84[CHD][hapmap]
rs1014969	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1029871	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1042779	0.83[CHB][hapmap];0.86[JPT][hapmap];0.83[MEX][hapmap];0.82[MKK][hapmap];0.82[TSI][hapmap]
rs10433615	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10510760	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1075653	0.82[GIH][hapmap];0.86[JPT][hapmap];0.84[MKK][hapmap]
rs1076425	0.82[GIH][hapmap];0.86[JPT][hapmap]
rs10780035	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10865973	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10865974	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10933	0.91[ASN][1000 genomes]
rs1108842	1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap]
rs11130307	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11130308	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11130310	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11130311	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11130312	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11130313	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11130314	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11130315	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11130317	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11130318	0.85[EUR][1000 genomes]
rs11130319	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11130321	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11130323	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11130324	0.81[ASN][1000 genomes]
rs11130325	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11130326	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11130327	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11177	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11235	0.95[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs1133415	0.91[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap]
rs11708075	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11709448	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11711421	0.95[JPT][hapmap]
rs11714030	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11714088	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11714419	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11714565	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11716747	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11717043	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11717836	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11718420	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11718509	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11719514	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11720159	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11720243	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11720432	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12486554	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12486847	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12487445	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12487591	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12488461	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.89[TSI][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12488527	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12489828	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12493107	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12496476	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12496634	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12497998	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12498066	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12629699	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12629701	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12632265	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12632381	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12635140	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13059862	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs13060048	0.80[EUR][1000 genomes]
rs13060675	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13061253	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13061423	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13063160	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs13064064	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13065019	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13065851	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13068293	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13069481	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13071584	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13074853	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13076193	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13078422	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13079063	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13081028	0.86[CHB][hapmap];0.86[CHD][hapmap];0.81[LWK][hapmap]
rs13081031	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13081155	0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs13082208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13082960	0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13083798	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs13085331	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13085775	0.94[ASW][hapmap];0.84[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13085895	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13086297	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13086898	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13087772	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13094778	0.82[AMR][1000 genomes]
rs13095332	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13098776	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13303	0.95[CHB][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap]
rs1468638	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1561337	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17052256	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs17052259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs17264436	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1821879	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1961958	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap]
rs1961959	0.91[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2019065	0.83[CHB][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap]
rs2028216	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2071506	0.82[GIH][hapmap];0.86[JPT][hapmap];0.84[MKK][hapmap]
rs2071507	0.91[JPT][hapmap]
rs2071508	0.82[GIH][hapmap];0.86[JPT][hapmap]
rs2072390	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2079929	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2083180	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2109634	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2118540	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2159644	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2164884	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2164885	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2230534	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2230535	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2239549	0.86[JPT][hapmap];0.82[TSI][hapmap]
rs2239551	0.86[JPT][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap]
rs2239699	0.84[JPT][hapmap]
rs2240919	0.86[JPT][hapmap]
rs2240920	0.91[JPT][hapmap];0.87[MEX][hapmap]
rs2251219	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap]
rs2268023	0.86[JPT][hapmap]
rs2268024	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2268025	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2268026	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2268027	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2270197	0.86[JPT][hapmap]
rs2276824	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs2286798	0.82[GIH][hapmap];0.91[JPT][hapmap];0.81[TSI][hapmap]
rs2286800	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2289247	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289249	0.91[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap]
rs2289250	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2300149	0.82[GIH][hapmap];0.86[JPT][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap]
rs2336145	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2336146	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2336148	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2336149	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2336542	0.95[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2336545	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2535629	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs2577831	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.81[LWK][hapmap];0.84[ASN][1000 genomes]
rs2590838	1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.81[LWK][hapmap];0.83[ASN][1000 genomes]
rs2590846	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2878628	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs2878726	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs33967311	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34017441	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34115864	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34157897	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34168767	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34173654	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34215106	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34291015	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34341238	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34537256	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34610142	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34610878	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34739010	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34754793	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34757451	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34918356	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34954168	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35107891	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35211965	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35212380	0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs35249778	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35315313	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35409678	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35526119	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35976524	0.94[ASN][1000 genomes]
rs3617	0.82[CHB][hapmap]
rs3733039	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3733041	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3733045	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3755798	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3755806	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3774349	0.93[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs3774354	0.86[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap]
rs3774355	0.81[JPT][hapmap]
rs3774365	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3774366	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3796353	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs3852066	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4130905	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4282054	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap]
rs4336110	0.87[EUR][1000 genomes]
rs4435633	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4475032	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap]
rs4687546	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4687547	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4687548	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4687549	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4687550	0.86[JPT][hapmap]
rs4687551	0.82[GIH][hapmap];0.81[JPT][hapmap]
rs4687625	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4687626	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap]
rs4687629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4687630	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4687633	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4687636	0.86[TSI][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4687637	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4687638	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4687639	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4687644	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4687648	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4687650	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62253700	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62253703	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62253733	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62255362	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62255364	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62255371	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62255396	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6414569	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6414570	0.82[AMR][1000 genomes]
rs6445528	0.83[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.96[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs6445529	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6445531	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6445534	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6445535	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6617	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67539070	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6762457	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6762813	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6768697	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6770463	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6778329	0.90[JPT][hapmap]
rs6778735	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs6778844	0.91[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap]
rs678	0.91[JPT][hapmap]
rs6786043	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs6786919	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs6787154	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6788887	0.82[EUR][1000 genomes]
rs6788993	0.82[EUR][1000 genomes]
rs6790330	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6796726	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6798246	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs68021750	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6803012	0.91[CEU][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6804145	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6805156	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6976	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs731831	0.82[CHB][hapmap];0.85[CHD][hapmap]
rs7611731	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7612511	0.82[ASN][1000 genomes]
rs7614498	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7614981	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs7620039	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7622694	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7623199	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7624716	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7625743	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7628578	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7638162	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7638808	0.89[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs7642198	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7646741	0.90[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7652191	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7653028	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs767418	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8906	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9324	0.82[GIH][hapmap];0.86[JPT][hapmap]
rs9714129	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9758945	0.82[EUR][1000 genomes]
rs9853056	0.86[CHB][hapmap];0.86[CHD][hapmap]
rs9879090	1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs9881468	0.86[JPT][hapmap]
rs9917834	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs998909	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv984563	chr3:52516115-52867075	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

mRNA abundance (count:20)

SNP	Gene	Cis/trans	Tissue	Source
rs1866268	GLT8D1	cis	lymphoblastoid	seeQTL
rs1866268	NEK4	cis	parietal	SCAN
rs1866268	GNL3	cis	cerebellum	SCAN
rs1866268	NT5DC2	cis	lymphoblastoid	seeQTL
rs1866268	FLJ12442	cis	multi-tissue	Pritchard
rs1866268	GLT8D1	Cis_1M	lymphoblastoid	RTeQTL
rs1866268	NEK4	cis	cerebellum	SCAN
rs1866268	NT5DC2	cis	multi-tissue	Pritchard
rs1866268	PBRM1	cis	Artery Tibial	GTEx
rs1866268	MUSTN1	cis	Artery Aorta	GTEx
rs1866268	NT5DC2	Cis_1M	lymphoblastoid	RTeQTL
rs1866268	SPCS1	cis	parietal	SCAN
rs1866268	GLYCTK	cis	parietal	SCAN
rs1866268	NT5DC2	cis	Skin Sun Exposed Lower leg	GTEx
rs1866268	ITIH4	cis	parietal	SCAN
rs1866268	PBRM1	cis	Thyroid	GTEx
rs1866268	GNL3	cis	parietal	SCAN
rs1866268	RBM6	cis	cerebellum	SCAN
rs1866268	TMEM110	cis	parietal	SCAN
rs1866268	RBM6	cis	parietal	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52712600-52719400	Weak transcription	Gastric	stomach
2	chr3:52714200-52719400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:52715200-52719400	Weak transcription	Spleen	Spleen
4	chr3:52716800-52719400	Weak transcription	Small Intestine	intestine
5	chr3:52717800-52721000	Active TSS	GM12878-XiMat	blood
6	chr3:52718000-52719400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:52718000-52719400	Flanking Active TSS	Liver	Liver
8	chr3:52718000-52719400	Weak transcription	Lung	lung
9	chr3:52718000-52720600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:52718000-52721200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:52718000-52721200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr3:52718200-52719400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:52718200-52719400	Weak transcription	Pancreas	Pancrea
14	chr3:52718200-52720400	Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr3:52718200-52720400	Active TSS	Fetal Brain Female	brain
16	chr3:52718200-52720600	Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr3:52718400-52719400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr3:52718400-52720400	Active TSS	K562	blood
19	chr3:52718400-52720800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr3:52718400-52720800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr3:52718400-52720800	Active TSS	Fetal Thymus	thymus
22	chr3:52718400-52720800	Active TSS	NHLF	lung
23	chr3:52718400-52721200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr3:52718600-52719400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
25	chr3:52718600-52719400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr3:52718600-52720000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr3:52718600-52720800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr3:52718600-52721200	Active TSS	Psoas Muscle	Psoas
29	chr3:52718800-52719400	Flanking Active TSS	Primary B cells from cord blood	blood
30	chr3:52718800-52719400	Flanking Active TSS	Primary hematopoietic stem cells	blood
31	chr3:52718800-52719400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
32	chr3:52718800-52719400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
33	chr3:52718800-52719400	Active TSS	Fetal Brain Male	brain
34	chr3:52718800-52719400	Active TSS	HepG2	liver
35	chr3:52718800-52720200	Active TSS	HUES6 Cell Line	embryonic stem cell
36	chr3:52718800-52720200	Active TSS	Rectal Smooth Muscle	rectum
37	chr3:52718800-52720200	Active TSS	Right Ventricle	heart
38	chr3:52718800-52720400	Active TSS	Brain Germinal Matrix	brain
39	chr3:52718800-52720400	Active TSS	Thymus	Thymus
40	chr3:52718800-52720600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr3:52718800-52720600	Active TSS	Breast Myoepithelial Primary Cells	Breast
42	chr3:52718800-52720800	Active TSS	H1 Cell Line	embryonic stem cell
43	chr3:52718800-52720800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr3:52718800-52720800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr3:52718800-52720800	Active TSS	Stomach Mucosa	stomach
46	chr3:52718800-52720800	Active TSS	HSMM	muscle
47	chr3:52718800-52720800	Active TSS	NHDF-Ad	bronchial
48	chr3:52718800-52721000	Active TSS	Right Atrium	heart
49	chr3:52718800-52721200	Active TSS	ES-I3 Cell Line	embryonic stem cell
50	chr3:52719000-52719400	Flanking Active TSS	Primary B cells from peripheral blood	blood

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Variant report

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