Variant report

Variant	rs6768697
Chromosome Location	chr3:52703615-52703616
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:52541463..52544017-chr3:52702103..52704992,2	MCF-7	breast:
2	chr3:52649013..52651093-chr3:52703505..52705093,2	K562	blood:
3	chr3:52697891..52699504-chr3:52702797..52704715,2	K562	blood:
4	chr3:52703247..52705506-chr3:52723285..52726196,3	K562	blood:

Variant related genes	Relation type
ENSG00000010327	Chromatin interaction
ENSG00000163939	Chromatin interaction
ENSG00000222345	Chromatin interaction
ENSG00000238862	Chromatin interaction

Extended variants
information (count: 244 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:243)

rs_ID	r²[population]
rs1014969	0.81[ASN][1000 genomes]
rs1029871	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10433615	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10510760	0.96[ASN][1000 genomes]
rs10780035	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10865973	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10865974	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10933	0.85[ASN][1000 genomes]
rs11130307	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11130308	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11130310	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11130311	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11130312	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11130313	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11130314	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11130315	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11130317	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11130318	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11130319	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11130321	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11130323	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11130324	0.81[ASN][1000 genomes]
rs11130325	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11130326	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11130327	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11177	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11235	0.86[ASN][1000 genomes]
rs1133415	0.81[ASN][1000 genomes]
rs11708075	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11709448	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11714030	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11714088	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11714419	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11714565	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11716747	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11717043	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11717836	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11718420	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11718509	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11719514	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11720159	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11720243	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11720432	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12486554	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12486847	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12487445	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12487591	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12488461	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12488527	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12493107	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12496476	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12496634	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12497998	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12498066	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12629699	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12629701	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12632265	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12632381	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12635140	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13059862	0.83[ASN][1000 genomes]
rs13060048	0.83[ASN][1000 genomes]
rs13060675	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13061253	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13061423	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13063160	0.83[ASN][1000 genomes]
rs13064064	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13065019	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13065851	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13068293	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13069481	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13071584	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13074853	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13076193	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13076398	0.80[ASN][1000 genomes]
rs13078422	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13079063	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13081031	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13081155	0.86[ASN][1000 genomes]
rs13082208	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13082960	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13083798	0.90[ASN][1000 genomes]
rs13085331	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13085775	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13085895	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13086297	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13086898	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13087772	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13095332	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13098776	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1468638	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1561337	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1570	0.82[ASN][1000 genomes]
rs17052256	0.82[ASN][1000 genomes]
rs17052259	0.82[ASN][1000 genomes]
rs17264436	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1821879	0.81[ASN][1000 genomes]
rs1866268	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1961958	0.80[EUR][1000 genomes]
rs1961959	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2028216	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2072390	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2079929	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2083180	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2109634	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2118540	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2159644	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2164884	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2164885	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2230534	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2230535	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2239549	0.80[AMR][1000 genomes]
rs2239551	0.80[AMR][1000 genomes]
rs2251219	0.82[ASN][1000 genomes]
rs2268024	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2268025	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2268026	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2268027	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2276824	0.89[ASN][1000 genomes]
rs2286800	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2289247	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2289249	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2289250	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2336145	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2336146	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2336148	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2336149	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2336542	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2336545	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2577831	0.89[ASN][1000 genomes]
rs2590838	0.88[ASN][1000 genomes]
rs2590846	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2878628	0.82[ASN][1000 genomes]
rs2878726	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs33964154	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs33967311	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34017441	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34115864	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34157897	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34168767	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34173654	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34215106	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34291015	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34341238	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34537256	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34610142	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34610878	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34739010	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34754793	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34757451	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34918356	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34954168	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35107891	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35211965	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35212380	0.87[ASN][1000 genomes]
rs35249778	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35315313	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35409678	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35526119	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35976524	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3733039	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3733041	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3733045	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3755798	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3755806	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3774349	0.87[ASN][1000 genomes]
rs3774354	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs3774355	0.82[AMR][1000 genomes]
rs3774365	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3774366	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3796353	0.82[ASN][1000 genomes]
rs3852066	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4130905	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4336110	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4435633	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4687546	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4687547	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4687548	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4687549	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4687629	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4687630	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4687633	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4687636	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4687637	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4687638	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4687639	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4687644	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4687648	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4687650	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62253700	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62253703	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62253733	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62255362	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62255364	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62255371	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62255396	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62256903	0.80[ASN][1000 genomes]
rs6414569	0.86[ASN][1000 genomes]
rs6445528	0.81[ASN][1000 genomes]
rs6445529	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6445531	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6445534	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6445535	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6617	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67539070	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6762457	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6762813	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6770463	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6778844	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs678	0.80[AMR][1000 genomes]
rs6786043	0.80[ASN][1000 genomes]
rs6786919	0.83[ASN][1000 genomes]
rs6787154	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6788887	0.83[ASN][1000 genomes]
rs6788993	0.83[ASN][1000 genomes]
rs6790330	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6796726	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6798246	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs68021750	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6803012	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6804145	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6805156	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6976	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7611731	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7612511	0.87[ASN][1000 genomes]
rs7614498	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7620039	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7622694	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7623199	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7624716	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7625743	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7628578	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7638162	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7638808	0.81[ASN][1000 genomes]
rs7642198	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7646741	0.81[ASN][1000 genomes]
rs7652191	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7653028	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs767418	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8906	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9714129	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9879090	0.89[ASN][1000 genomes]
rs9917834	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs998909	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv984563	chr3:52516115-52867075	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs6768697	PBRM1	cis	Thyroid	GTEx
rs6768697	NT5DC2	Cis_1M	lymphoblastoid	RTeQTL
rs6768697	GLT8D1	Cis_1M	lymphoblastoid	RTeQTL
rs6768697	NT5DC2	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52587200-52719200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:52592200-52719200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:52636000-52703800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:52636000-52704000	Strong transcription	Placenta	Placenta
5	chr3:52637200-52715800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:52642600-52711200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr3:52650000-52712200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr3:52655200-52716400	Strong transcription	Fetal Thymus	thymus
9	chr3:52655800-52704000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr3:52656600-52704600	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr3:52660800-52704800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr3:52665400-52719200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:52670400-52704600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr3:52670800-52715400	Strong transcription	Dnd41	blood
15	chr3:52681200-52716200	Strong transcription	Fetal Muscle Trunk	muscle
16	chr3:52684800-52709000	Weak transcription	Stomach Mucosa	stomach
17	chr3:52688000-52714800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr3:52689000-52704600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:52690200-52704600	Weak transcription	Fetal Heart	heart
20	chr3:52693800-52709400	Weak transcription	Right Ventricle	heart
21	chr3:52695200-52705800	Weak transcription	Pancreas	Pancrea
22	chr3:52696000-52712000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr3:52696200-52704400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr3:52696200-52704400	Weak transcription	A549	lung
25	chr3:52696200-52705800	Weak transcription	Colonic Mucosa	Colon
26	chr3:52696200-52706000	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr3:52696200-52711800	Weak transcription	Aorta	Aorta
28	chr3:52696400-52704000	Weak transcription	Brain Anterior Caudate	brain
29	chr3:52696400-52704600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr3:52696400-52710200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr3:52697400-52703800	Weak transcription	Primary hematopoietic stem cells	blood
32	chr3:52697400-52704600	Weak transcription	K562	blood
33	chr3:52697600-52703800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr3:52697600-52704600	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr3:52697600-52704800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr3:52697600-52705000	Weak transcription	Fetal Kidney	kidney
37	chr3:52697600-52706000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr3:52697600-52710200	Weak transcription	Fetal Brain Male	brain
39	chr3:52697800-52704600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr3:52698200-52703800	Weak transcription	NHLF	lung
41	chr3:52698200-52706000	Weak transcription	Esophagus	oesophagus
42	chr3:52698600-52704000	Strong transcription	Primary T helper cells PMA-I stimulated	--
43	chr3:52698800-52714400	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr3:52699000-52704400	Strong transcription	Duodenum Mucosa	Duodenum
45	chr3:52699200-52704600	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr3:52699200-52707200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr3:52699400-52706400	Strong transcription	Brain Hippocampus Middle	brain
48	chr3:52699400-52707000	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr3:52699400-52715600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr3:52699800-52704400	Weak transcription	Rectal Smooth Muscle	rectum

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