Variant report

Variant	rs6425042
Chromosome Location	chr1:172692822-172692823
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172689246..172691904-chr1:172691926..172693561,2	K562	blood:
2	chr1:172686833..172688972-chr1:172691671..172694173,3	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11803350	0.85[AMR][1000 genomes]
rs1492902	0.85[AMR][1000 genomes]
rs1492903	0.85[AMR][1000 genomes]
rs16844927	0.85[AMR][1000 genomes]
rs16844937	0.85[AMR][1000 genomes]
rs16844939	0.85[AMR][1000 genomes]
rs55913261	0.85[AMR][1000 genomes]
rs56663247	0.85[AMR][1000 genomes]
rs57707973	0.85[AMR][1000 genomes]
rs61223740	0.85[AMR][1000 genomes]
rs61383871	0.85[AMR][1000 genomes]
rs6425039	0.85[AMR][1000 genomes]
rs6425040	0.85[AMR][1000 genomes]
rs6664516	0.85[AMR][1000 genomes]
rs6691607	0.85[AMR][1000 genomes]
rs73038034	0.85[AMR][1000 genomes]
rs73038039	0.85[AMR][1000 genomes]
rs73038049	0.85[AMR][1000 genomes]
rs73038063	0.85[AMR][1000 genomes]
rs73038078	0.85[AMR][1000 genomes]
rs73038085	0.85[AMR][1000 genomes]
rs73038088	0.85[AMR][1000 genomes]
rs7519689	0.85[AMR][1000 genomes]
rs7527983	0.85[AMR][1000 genomes]
rs7532033	0.85[AMR][1000 genomes]
rs7537304	0.85[AMR][1000 genomes]
rs7542816	0.85[AMR][1000 genomes]
rs7553473	0.85[AMR][1000 genomes]
rs987261	0.85[AMR][1000 genomes]
rs989340	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv946505	chr1:172689672-172693064	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172686000-172693600	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr1:172686200-172693800	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr1:172686200-172693800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr1:172686200-172693800	Weak transcription	Fetal Thymus	thymus
5	chr1:172688800-172693600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr1:172689200-172693200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr1:172689200-172693600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr1:172689200-172693600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr1:172689200-172693600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr1:172689200-172693600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr1:172689200-172693800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr1:172689200-172694000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr1:172689200-172696800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr1:172689200-172700400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr1:172689400-172693000	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr1:172691800-172696600	Enhancers	Placenta Amnion	Placenta Amnion
17	chr1:172692000-172693400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr1:172692200-172693200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr1:172692200-172693200	Enhancers	HMEC	breast
20	chr1:172692400-172693400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr1:172692400-172693400	Enhancers	NHEK	skin
22	chr1:172692400-172694200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr1:172692800-172693200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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