The 2.0 version of rSNPBase

Variant report

Variant rs16844927
Chromosome Location chr1:172689516-172689517
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:32 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172684000-172692400 Weak transcription HUES64 Cell Line embryonic stem cell
2 chr1:172685000-172690400 Enhancers Placenta Placenta
3 chr1:172686000-172693600 Weak transcription Primary T helper cells fromperipheralblood blood
4 chr1:172686200-172693800 Weak transcription Primary T cells fromperipheralblood blood
5 chr1:172686200-172693800 Weak transcription Primary T helper naive cells fromperipheralblood blood
6 chr1:172686200-172693800 Weak transcription Fetal Thymus thymus
7 chr1:172687000-172689600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr1:172687000-172689800 Enhancers Placenta Amnion Placenta Amnion
9 chr1:172687600-172689800 Enhancers Breast Myoepithelial Primary Cells Breast
10 chr1:172687800-172692400 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
11 chr1:172688000-172690000 Enhancers ES-I3 Cell Line embryonic stem cell
12 chr1:172688800-172690000 Enhancers HMEC breast
13 chr1:172688800-172693600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
14 chr1:172689000-172689600 Enhancers HUES48 Cell Line embryonic stem cell
15 chr1:172689000-172689800 Enhancers iPS-15b Cell Line embryonic stem cell
16 chr1:172689000-172690000 Enhancers HUES6 Cell Line embryonic stem cell
17 chr1:172689000-172690200 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
18 chr1:172689200-172689800 Enhancers H1 Cell Line embryonic stem cell
19 chr1:172689200-172689800 Enhancers NHEK skin
20 chr1:172689200-172692200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
21 chr1:172689200-172693200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
22 chr1:172689200-172693600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
23 chr1:172689200-172693600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
24 chr1:172689200-172693600 Weak transcription Primary T regulatory cells fromperipheralblood blood
25 chr1:172689200-172693600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
26 chr1:172689200-172693800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
27 chr1:172689200-172694000 Weak transcription Primary T helper naive cells from peripheral blood blood
28 chr1:172689200-172696800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
29 chr1:172689200-172700400 Weak transcription Primary T killer memory cells from peripheral blood blood
30 chr1:172689400-172690200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr1:172689400-172690400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
32 chr1:172689400-172693000 Weak transcription Primary T helper cells PMA-I stimulated --

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Last update: Aug 31, 2015