Variant report
| Variant | rs16844968 |
|---|---|
| Chromosome Location | chr1:172728135-172728136 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
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| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs11803350 | 0.85[AMR][1000 genomes] |
| rs1492902 | 0.85[AMR][1000 genomes] |
| rs1492903 | 0.85[AMR][1000 genomes] |
| rs16844927 | 0.85[AMR][1000 genomes] |
| rs16844937 | 0.85[AMR][1000 genomes] |
| rs16844939 | 0.85[AMR][1000 genomes] |
| rs16844967 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs41421246 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs55913261 | 0.85[AMR][1000 genomes] |
| rs56663247 | 0.85[AMR][1000 genomes] |
| rs57707973 | 0.85[AMR][1000 genomes] |
| rs59424718 | 0.85[AFR][1000 genomes] |
| rs61223740 | 0.85[AMR][1000 genomes] |
| rs61383871 | 0.85[AMR][1000 genomes] |
| rs61489888 | 0.88[AFR][1000 genomes] |
| rs6425039 | 0.85[AMR][1000 genomes] |
| rs6425040 | 0.85[AMR][1000 genomes] |
| rs6425097 | 0.88[AFR][1000 genomes] |
| rs6664516 | 0.85[AMR][1000 genomes] |
| rs6691607 | 0.85[AMR][1000 genomes] |
| rs73038034 | 0.85[AMR][1000 genomes] |
| rs73038039 | 0.85[AMR][1000 genomes] |
| rs73038049 | 0.85[AMR][1000 genomes] |
| rs73038063 | 0.85[AMR][1000 genomes] |
| rs73038078 | 0.85[AMR][1000 genomes] |
| rs73038085 | 0.85[AMR][1000 genomes] |
| rs73038088 | 0.85[AMR][1000 genomes] |
| rs73038099 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7519689 | 0.85[AMR][1000 genomes] |
| rs7527983 | 0.85[AMR][1000 genomes] |
| rs7532033 | 0.85[AMR][1000 genomes] |
| rs7537304 | 0.85[AMR][1000 genomes] |
| rs7542816 | 0.85[AMR][1000 genomes] |
| rs7553473 | 0.85[AMR][1000 genomes] |
| rs987261 | 0.85[AMR][1000 genomes] |
| rs989340 | 0.85[AMR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:172716400-172729400 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
| 2 | chr1:172727200-172728200 | Enhancers | Monocytes-CD14+_RO01746 | blood |
