The 2.0 version of rSNPBase

Variant report

Variant rs7553473
Chromosome Location chr1:172696224-172696225
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:16 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172689200-172696800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr1:172689200-172700400 Weak transcription Primary T killer memory cells from peripheral blood blood
3 chr1:172691800-172696600 Enhancers Placenta Amnion Placenta Amnion
4 chr1:172693400-172712200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr1:172693800-172697400 Enhancers Primary monocytes fromperipheralblood blood
6 chr1:172694600-172697400 Weak transcription Primary T helper naive cells from peripheral blood blood
7 chr1:172695400-172696400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
8 chr1:172695600-172696400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
9 chr1:172695800-172696400 Enhancers Primary hematopoietic stem cells blood
10 chr1:172695800-172697000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
11 chr1:172696000-172696600 Enhancers Primary hematopoietic stem cells short term culture blood
12 chr1:172696000-172696800 Enhancers Primary T cells fromperipheralblood blood
13 chr1:172696000-172697200 Enhancers Primary Natural Killer cells fromperipheralblood blood
14 chr1:172696000-172697600 ZNF genes & repeats H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
15 chr1:172696200-172696400 Flanking Active TSS Monocytes-CD14+_RO01746 blood
16 chr1:172696200-172696600 Enhancers Lung lung

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Last update: Aug 31, 2015