Variant report

Variant	rs73038049
Chromosome Location	chr1:172685171-172685172
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172578540..172579151-chr1:172684967..172685468,2	MCF-7	breast:
2	chr1:172674792..172676730-chr1:172683938..172685781,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11803323	0.85[AMR][1000 genomes]
rs11803350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1492902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1492903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16844922	0.85[AMR][1000 genomes]
rs16844927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16844937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16844939	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16844967	0.85[AMR][1000 genomes]
rs16844968	0.85[AMR][1000 genomes]
rs41421246	0.85[AMR][1000 genomes]
rs55913261	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56663247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57707973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59977644	0.85[AMR][1000 genomes]
rs61223740	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61383871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6425039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6425040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6425042	0.85[AMR][1000 genomes]
rs6664516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6691607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038078	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038085	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038088	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038099	0.85[AMR][1000 genomes]
rs7519689	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7527983	1.00[AMR][1000 genomes]
rs7532033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7537304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7542816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7553473	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs987261	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs989340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172678400-172685800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr1:172679000-172685400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr1:172679000-172685400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr1:172681000-172685400	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr1:172683400-172689200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr1:172684000-172688000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr1:172684000-172688400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr1:172684000-172689000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr1:172684000-172692400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr1:172684600-172686200	Enhancers	NHEK	skin
11	chr1:172684800-172685600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:172684800-172685800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:172685000-172685400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:172685000-172685600	Enhancers	Placenta Amnion	Placenta Amnion
15	chr1:172685000-172685800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr1:172685000-172686000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr1:172685000-172686000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr1:172685000-172686000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr1:172685000-172686000	Enhancers	HMEC	breast
20	chr1:172685000-172686200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr1:172685000-172686800	Enhancers	Fetal Heart	heart
22	chr1:172685000-172690400	Enhancers	Placenta	Placenta

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