Variant report

Variant	rs73038085
Chromosome Location	chr1:172696966-172696967
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:172419133..172419664-chr1:172696878..172697829,2	K562	blood:
2	chr1:172688546..172689151-chr1:172696697..172697446,2	MCF-7	breast:
3	chr1:172578385..172579260-chr1:172696065..172697862,5	MCF-7	breast:
4	chr1:172412802..172413734-chr1:172696936..172697821,3	MCF-7	breast:
5	chr1:172418751..172419643-chr1:172696748..172697418,2	MCF-7	breast:
6	chr1:172579368..172580143-chr1:172696807..172697710,2	MCF-7	breast:
7	chr1:172551867..172552785-chr1:172696915..172697429,2	MCF-7	breast:
8	chr1:172552006..172552770-chr1:172696869..172697782,2	MCF-7	breast:
9	chr1:172578808..172579312-chr1:172696717..172697220,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000135845	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11803323	0.85[AMR][1000 genomes]
rs11803350	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1492902	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1492903	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16844922	0.85[AMR][1000 genomes]
rs16844927	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16844937	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16844939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16844967	0.85[AMR][1000 genomes]
rs16844968	0.85[AMR][1000 genomes]
rs41421246	0.85[AMR][1000 genomes]
rs55913261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56663247	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57707973	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59977644	0.85[AMR][1000 genomes]
rs61223740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61383871	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6425039	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6425040	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6425042	0.85[AMR][1000 genomes]
rs6664516	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6691607	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038034	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038039	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038049	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038063	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038088	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038099	0.85[AMR][1000 genomes]
rs7519689	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7527983	1.00[AMR][1000 genomes]
rs7532033	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7537304	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7542816	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7553473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs987261	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs989340	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172689200-172700400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr1:172693400-172712200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:172693800-172697400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr1:172694600-172697400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr1:172695800-172697000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr1:172696000-172697200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr1:172696000-172697600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:172696800-172697400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:172696800-172697400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:172696800-172697400	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:172696800-172697400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
12	chr1:172696800-172702600	Weak transcription	Monocytes-CD14+_RO01746	blood

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