Variant report

Variant	rs6670076
Chromosome Location	chr1:161384355-161384356
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:161371806..161374700-chr1:161382431..161384803,2	MCF-7	breast:

Extended variants
information (count: 157 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:142)

rs_ID	r²[population]
rs10157158	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10157457	0.89[ASN][1000 genomes]
rs10157990	0.90[ASN][1000 genomes]
rs10157991	0.91[ASN][1000 genomes]
rs10158388	0.80[ASN][1000 genomes]
rs10494350	0.80[ASN][1000 genomes]
rs10494351	0.80[ASN][1000 genomes]
rs10494352	0.80[ASN][1000 genomes]
rs10494353	0.80[ASN][1000 genomes]
rs10494354	0.80[ASN][1000 genomes]
rs10494355	0.89[ASN][1000 genomes]
rs1133805	0.80[ASN][1000 genomes]
rs1133806	0.80[ASN][1000 genomes]
rs11582439	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11588994	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12239492	0.81[ASN][1000 genomes]
rs12239719	0.80[ASN][1000 genomes]
rs12385723	0.80[ASN][1000 genomes]
rs12385733	0.80[ASN][1000 genomes]
rs12725465	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12730813	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12738660	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12745476	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12757174	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13374037	0.80[ASN][1000 genomes]
rs13375385	0.80[ASN][1000 genomes]
rs13375937	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13376158	0.80[ASN][1000 genomes]
rs16832835	0.80[ASN][1000 genomes]
rs16832842	0.80[ASN][1000 genomes]
rs16832846	0.80[ASN][1000 genomes]
rs16832851	0.80[ASN][1000 genomes]
rs16832854	0.80[ASN][1000 genomes]
rs16832869	0.80[ASN][1000 genomes]
rs16832871	0.80[ASN][1000 genomes]
rs16832874	0.80[ASN][1000 genomes]
rs16832883	0.81[ASN][1000 genomes]
rs16832884	0.80[ASN][1000 genomes]
rs16832887	0.80[ASN][1000 genomes]
rs16832894	0.80[ASN][1000 genomes]
rs16832897	0.80[ASN][1000 genomes]
rs16832900	0.80[ASN][1000 genomes]
rs16832902	0.80[ASN][1000 genomes]
rs16832908	0.80[ASN][1000 genomes]
rs16832922	0.82[ASN][1000 genomes]
rs16832948	0.89[ASN][1000 genomes]
rs3087596	0.80[ASN][1000 genomes]
rs34538569	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35006684	0.80[ASN][1000 genomes]
rs35130144	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35215727	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3934593	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3935401	0.80[ASN][1000 genomes]
rs4077289	0.80[ASN][1000 genomes]
rs4077290	0.80[ASN][1000 genomes]
rs4077631	0.81[ASN][1000 genomes]
rs41270861	0.80[ASN][1000 genomes]
rs4291521	0.81[ASN][1000 genomes]
rs4319356	0.80[ASN][1000 genomes]
rs4400628	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4463689	0.80[ASN][1000 genomes]
rs4474277	0.80[ASN][1000 genomes]
rs4481873	0.80[ASN][1000 genomes]
rs4525064	0.80[ASN][1000 genomes]
rs4534403	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4534404	0.80[ASN][1000 genomes]
rs4534405	0.80[ASN][1000 genomes]
rs4585997	0.80[ASN][1000 genomes]
rs4600063	0.80[ASN][1000 genomes]
rs4634926	0.80[ASN][1000 genomes]
rs4634927	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55674249	0.81[ASN][1000 genomes]
rs55729989	0.80[ASN][1000 genomes]
rs55783815	0.80[ASN][1000 genomes]
rs55807618	0.80[ASN][1000 genomes]
rs55809622	0.80[ASN][1000 genomes]
rs55929617	0.80[ASN][1000 genomes]
rs55962831	0.80[ASN][1000 genomes]
rs55996762	0.81[ASN][1000 genomes]
rs56007456	0.80[ASN][1000 genomes]
rs56062031	0.81[ASN][1000 genomes]
rs56071922	0.80[ASN][1000 genomes]
rs56122953	0.81[ASN][1000 genomes]
rs56169917	0.81[ASN][1000 genomes]
rs56290916	0.80[ASN][1000 genomes]
rs56291729	0.89[ASN][1000 genomes]
rs56406825	0.80[ASN][1000 genomes]
rs56868836	0.80[ASN][1000 genomes]
rs57007882	0.80[ASN][1000 genomes]
rs57270150	0.80[ASN][1000 genomes]
rs57306652	0.80[ASN][1000 genomes]
rs57421557	0.80[ASN][1000 genomes]
rs57473118	0.80[ASN][1000 genomes]
rs57474688	0.81[ASN][1000 genomes]
rs57835711	0.80[ASN][1000 genomes]
rs57841279	0.80[ASN][1000 genomes]
rs57858140	0.80[ASN][1000 genomes]
rs58138146	0.80[ASN][1000 genomes]
rs58418155	0.81[ASN][1000 genomes]
rs58840032	0.89[ASN][1000 genomes]
rs58842513	0.80[ASN][1000 genomes]
rs58874147	0.80[ASN][1000 genomes]
rs59191996	0.80[ASN][1000 genomes]
rs59340690	0.80[ASN][1000 genomes]
rs59544428	0.80[ASN][1000 genomes]
rs59559479	0.80[ASN][1000 genomes]
rs59747425	0.80[ASN][1000 genomes]
rs59774375	0.80[ASN][1000 genomes]
rs59840298	0.80[ASN][1000 genomes]
rs60179510	0.80[ASN][1000 genomes]
rs60382588	0.80[ASN][1000 genomes]
rs60405593	0.81[ASN][1000 genomes]
rs60435895	0.80[ASN][1000 genomes]
rs60799370	0.80[ASN][1000 genomes]
rs60882053	0.81[ASN][1000 genomes]
rs61219424	0.81[ASN][1000 genomes]
rs61299084	0.81[ASN][1000 genomes]
rs61308286	0.80[ASN][1000 genomes]
rs61410886	0.89[ASN][1000 genomes]
rs61447446	0.80[ASN][1000 genomes]
rs61461118	0.80[ASN][1000 genomes]
rs61576374	0.80[ASN][1000 genomes]
rs61608953	0.89[ASN][1000 genomes]
rs61653684	0.80[ASN][1000 genomes]
rs6668174	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6675552	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6688180	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6693070	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74124931	0.81[ASN][1000 genomes]
rs74124933	0.89[ASN][1000 genomes]
rs74127629	0.81[ASN][1000 genomes]
rs74127630	0.81[ASN][1000 genomes]
rs74127635	0.81[ASN][1000 genomes]
rs74127636	0.81[ASN][1000 genomes]
rs74127638	0.80[ASN][1000 genomes]
rs74127639	0.80[ASN][1000 genomes]
rs74127641	0.80[ASN][1000 genomes]
rs74127657	0.80[ASN][1000 genomes]
rs74127658	0.80[ASN][1000 genomes]
rs7542784	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9330294	0.80[ASN][1000 genomes]
rs9970904	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432986	chr1:161221133-161673682	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1010776	chr1:161282384-161409218	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv432998	chr1:161335902-161673682	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
4	nsv872493	chr1:161339060-161413794	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
5	nsv433009	chr1:161343927-161639328	Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
6	nsv1005812	chr1:161343951-161548101	Weak transcription Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
7	nsv535182	chr1:161343951-161548101	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
8	esv2756866	chr1:161344255-161681552	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
9	esv2758972	chr1:161344255-161681552	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
10	nsv998957	chr1:161353351-161398414	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
11	nsv433020	chr1:161355634-161673682	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
12	esv2754329	chr1:161355728-161673682	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
13	nsv433031	chr1:161355728-161673682	Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
14	nsv433042	chr1:161372038-161673682	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
15	nsv946461	chr1:161372505-161384947	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6670076	FCGR2C	cis	Muscle Skeletal	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161371000-161387800	Weak transcription	Spleen	Spleen
2	chr1:161378200-161395400	Weak transcription	Pancreas	Pancrea
3	chr1:161379200-161391400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr1:161379600-161390800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr1:161380600-161389400	Weak transcription	Fetal Intestine Small	intestine
6	chr1:161383400-161390600	Weak transcription	K562	blood

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