The 2.0 version of rSNPBase

Variant report

Variant rs16832883
Chromosome Location chr1:161338246-161338247
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:59 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:161304600-161342600 Weak transcription Esophagus oesophagus
2 chr1:161312600-161341200 Weak transcription HMEC breast
3 chr1:161313000-161338400 Weak transcription Pancreas Pancrea
4 chr1:161313000-161341000 Weak transcription H9 Cell Line embryonic stem cell
5 chr1:161313000-161341200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr1:161321800-161348800 Weak transcription Gastric stomach
7 chr1:161327200-161339200 Weak transcription NHLF lung
8 chr1:161327400-161352600 Weak transcription Lung lung
9 chr1:161327600-161338600 Weak transcription Rectal Mucosa Donor 31 rectum
10 chr1:161328400-161359000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
11 chr1:161328600-161359000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
12 chr1:161334000-161342000 Weak transcription Aorta Aorta
13 chr1:161335000-161356000 Weak transcription K562 blood
14 chr1:161336400-161338400 Weak transcription Skeletal Muscle Male skeletal muscle
15 chr1:161336400-161339600 Weak transcription Adipose Nuclei Adipose
16 chr1:161336400-161339800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
17 chr1:161336400-161341600 Weak transcription Primary T cells from cord blood blood
18 chr1:161336400-161342600 Weak transcription Primary neutrophils fromperipheralblood blood
19 chr1:161336400-161348800 Weak transcription Placenta Placenta
20 chr1:161336600-161338400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
21 chr1:161336600-161340200 Weak transcription Hela-S3 cervix
22 chr1:161336600-161351600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
23 chr1:161336600-161352200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr1:161336600-161352200 Weak transcription Skeletal Muscle Female skeletal muscle
25 chr1:161336800-161338400 Weak transcription Rectal Mucosa Donor 29 rectum
26 chr1:161336800-161338600 Enhancers Liver Liver
27 chr1:161336800-161338600 Weak transcription Sigmoid Colon Sigmoid Colon
28 chr1:161336800-161338600 Weak transcription Thymus Thymus
29 chr1:161336800-161338800 Weak transcription Fetal Stomach stomach
30 chr1:161336800-161339000 Weak transcription HSMM muscle
31 chr1:161336800-161339200 Weak transcription Fetal Muscle Trunk muscle
32 chr1:161336800-161339800 Weak transcription Duodenum Mucosa Duodenum
33 chr1:161336800-161340200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
34 chr1:161336800-161340400 Weak transcription Primary monocytes fromperipheralblood blood
35 chr1:161336800-161341600 Weak transcription Monocytes-CD14+_RO01746 blood
36 chr1:161336800-161344600 Weak transcription Stomach Smooth Muscle stomach
37 chr1:161336800-161348600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
38 chr1:161336800-161348800 Weak transcription Fetal Muscle Leg muscle
39 chr1:161336800-161348800 Weak transcription Fetal Thymus thymus
40 chr1:161336800-161351600 Weak transcription NHEK skin
41 chr1:161337000-161338400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
42 chr1:161337000-161338600 Enhancers HepG2 liver
43 chr1:161337200-161338400 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
44 chr1:161337200-161341600 Weak transcription Primary T cells fromperipheralblood blood
45 chr1:161337400-161338600 Enhancers Brain Substantia Nigra brain
46 chr1:161337400-161338600 Enhancers Fetal Adrenal Gland Adrenal Gland
47 chr1:161337600-161338400 Enhancers Primary B cells from cord blood blood
48 chr1:161337800-161348800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
49 chr1:161337800-161356200 Weak transcription Primary T helper cells fromperipheralblood blood
50 chr1:161338000-161338400 Enhancers Pancreatic Islets Pancreatic Islet

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Last update: Aug 31, 2015