The 2.0 version of rSNPBase

Variant report

Variant rs55929617
Chromosome Location chr1:161340054-161340055
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:37 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:161304600-161342600 Weak transcription Esophagus oesophagus
2 chr1:161312600-161341200 Weak transcription HMEC breast
3 chr1:161313000-161341000 Weak transcription H9 Cell Line embryonic stem cell
4 chr1:161313000-161341200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr1:161321800-161348800 Weak transcription Gastric stomach
6 chr1:161327400-161352600 Weak transcription Lung lung
7 chr1:161328400-161359000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
8 chr1:161328600-161359000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr1:161334000-161342000 Weak transcription Aorta Aorta
10 chr1:161335000-161356000 Weak transcription K562 blood
11 chr1:161336400-161341600 Weak transcription Primary T cells from cord blood blood
12 chr1:161336400-161342600 Weak transcription Primary neutrophils fromperipheralblood blood
13 chr1:161336400-161348800 Weak transcription Placenta Placenta
14 chr1:161336600-161340200 Weak transcription Hela-S3 cervix
15 chr1:161336600-161351600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
16 chr1:161336600-161352200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr1:161336600-161352200 Weak transcription Skeletal Muscle Female skeletal muscle
18 chr1:161336800-161340200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
19 chr1:161336800-161340400 Weak transcription Primary monocytes fromperipheralblood blood
20 chr1:161336800-161341600 Weak transcription Monocytes-CD14+_RO01746 blood
21 chr1:161336800-161344600 Weak transcription Stomach Smooth Muscle stomach
22 chr1:161336800-161348600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
23 chr1:161336800-161348800 Weak transcription Fetal Muscle Leg muscle
24 chr1:161336800-161348800 Weak transcription Fetal Thymus thymus
25 chr1:161336800-161351600 Weak transcription NHEK skin
26 chr1:161337200-161341600 Weak transcription Primary T cells fromperipheralblood blood
27 chr1:161337800-161348800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
28 chr1:161337800-161356200 Weak transcription Primary T helper cells fromperipheralblood blood
29 chr1:161338000-161343400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
30 chr1:161338000-161346000 Weak transcription HUES48 Cell Line embryonic stem cell
31 chr1:161338000-161351600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr1:161338000-161356000 Weak transcription GM12878-XiMat blood
33 chr1:161338200-161340200 Weak transcription Osteobl bone
34 chr1:161338200-161342000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
35 chr1:161338200-161344000 Weak transcription Primary hematopoietic stem cells short term culture blood
36 chr1:161338200-161348600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
37 chr1:161338600-161346800 Weak transcription HepG2 liver

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Last update: Aug 31, 2015