The 2.0 version of rSNPBase

Variant report

Variant rs55747162
Chromosome Location chr1:161293804-161293805
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:161284800-161295000 Weak transcription Spleen Spleen
2 chr1:161284800-161300400 Weak transcription Aorta Aorta
3 chr1:161285000-161295600 Weak transcription Gastric stomach
4 chr1:161285000-161296600 Weak transcription Colonic Mucosa Colon
5 chr1:161285000-161298400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
6 chr1:161285000-161301800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
7 chr1:161285200-161295400 Weak transcription Primary B cells from cord blood blood
8 chr1:161285200-161295400 Weak transcription Brain Substantia Nigra brain
9 chr1:161285200-161295400 Weak transcription Fetal Kidney kidney
10 chr1:161285200-161295400 Weak transcription Right Ventricle heart
11 chr1:161285200-161299200 Weak transcription Brain Inferior Temporal Lobe brain
12 chr1:161285200-161321400 Weak transcription Stomach Mucosa stomach
13 chr1:161285400-161294600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
14 chr1:161285400-161294600 Weak transcription Brain Cingulate Gyrus brain
15 chr1:161285400-161295200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
16 chr1:161285400-161295400 Weak transcription Primary T cells from cord blood blood
17 chr1:161285400-161295400 Weak transcription Primary T killer naive cells fromperipheralblood blood
18 chr1:161285400-161295400 Weak transcription Brain Hippocampus Middle brain
19 chr1:161285400-161295400 Weak transcription A549 lung
20 chr1:161285400-161295800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
21 chr1:161285400-161296800 Weak transcription HSMMtube muscle
22 chr1:161285400-161298200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
23 chr1:161285400-161298400 Weak transcription Primary T helper naive cells from peripheral blood blood
24 chr1:161285400-161299800 Weak transcription Psoas Muscle Psoas
25 chr1:161285400-161302000 Weak transcription Fetal Brain Male brain
26 chr1:161285400-161303400 Weak transcription Rectal Smooth Muscle rectum
27 chr1:161285400-161303600 Weak transcription NHLF lung
28 chr1:161285400-161310200 Weak transcription HUVEC blood vessel
29 chr1:161285400-161321400 Weak transcription Pancreatic Islets Pancreatic Islet
30 chr1:161285600-161294000 Weak transcription Primary hematopoietic stem cells blood
31 chr1:161285600-161294000 Weak transcription Brain Anterior Caudate brain
32 chr1:161285600-161294000 Weak transcription NHEK skin
33 chr1:161285600-161298200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
34 chr1:161285600-161298200 Weak transcription HMEC breast
35 chr1:161285600-161298200 Weak transcription HSMM muscle
36 chr1:161285600-161302600 Weak transcription Esophagus oesophagus
37 chr1:161285800-161298800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
38 chr1:161286000-161295400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
39 chr1:161286200-161294800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
40 chr1:161286800-161299800 Weak transcription ES-I3 Cell Line embryonic stem cell
41 chr1:161286800-161337400 Weak transcription Fetal Heart heart
42 chr1:161287000-161337400 Weak transcription iPS-15b Cell Line embryonic stem cell
43 chr1:161289600-161295000 Weak transcription Pancreas Pancrea
44 chr1:161289600-161317200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
45 chr1:161291000-161294600 Weak transcription Fetal Muscle Trunk muscle
46 chr1:161292600-161299600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
47 chr1:161293200-161295000 Genic enhancers Primary T cells fromperipheralblood blood
48 chr1:161293200-161295600 Strong transcription Muscle Satellite Cultured Cells --
49 chr1:161293200-161297200 Strong transcription HUES6 Cell Line embryonic stem cell
50 chr1:161293200-161304600 Strong transcription Fetal Intestine Small intestine

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Last update: Aug 31, 2015