Variant report

Variant	rs3934593
Chromosome Location	chr1:161358828-161358829
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:28)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:28 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:161183364..161185126-chr1:161357239..161359435,2	K562	blood:
2	chr1:161358508..161360458-chr1:161366457..161368829,2	MCF-7	breast:
3	chr1:161354244..161356268-chr1:161357860..161359450,2	K562	blood:
4	chr1:161123324..161125351-chr1:161358305..161361204,4	K562	blood:
5	chr1:161171621..161173767-chr1:161358321..161361966,4	K562	blood:
6	chr1:161357605..161359788-chr1:161389913..161391867,2	K562	blood:
7	chr1:161283233..161286394-chr1:161358272..161361598,5	K562	blood:
8	chr1:161283679..161286521-chr1:161357894..161359934,4	K562	blood:
9	chr1:161358757..161360406-chr1:161361978..161363939,2	K562	blood:
10	chr1:161194802..161197493-chr1:161358344..161361187,2	MCF-7	breast:
11	chr1:161356052..161365834-chr1:161365949..161371376,30	K562	blood:
12	chr1:161335442..161337167-chr1:161358707..161360839,2	K562	blood:
13	chr1:161170753..161176736-chr1:161358018..161361909,11	K562	blood:
14	chr1:161341445..161342945-chr1:161357890..161360001,2	K562	blood:
15	chr1:161358757..161361618-chr1:161398787..161400616,2	K562	blood:
16	chr1:161357437..161366069-chr1:161366187..161371309,27	K562	blood:
17	chr1:161273676..161276435-chr1:161357253..161360044,2	K562	blood:
18	chr1:161171093..161173852-chr1:161357935..161360816,5	MCF-7	breast:
19	chr1:161337567..161339294-chr1:161358166..161360849,2	K562	blood:
20	chr1:161358247..161360860-chr1:161371655..161373907,3	K562	blood:
21	chr1:161352351..161353889-chr1:161357859..161359793,2	K562	blood:
22	chr1:161134865..161137183-chr1:161358550..161360077,2	K562	blood:
23	chr1:161356452..161358172-chr1:161358237..161361223,3	MCF-7	breast:
24	chr1:161147390..161148899-chr1:161358540..161360873,2	MCF-7	breast:
25	chr1:161145759..161147740-chr1:161357028..161358969,2	K562	blood:
26	chr1:161123352..161125351-chr1:161358336..161359873,2	K562	blood:
27	chr1:161334444..161337167-chr1:161357500..161360839,3	K562	blood:
28	chr1:161358408..161361301-chr1:161374054..161376270,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000206921	Chromatin interaction
ENSG00000158869	Chromatin interaction
ENSG00000158887	Chromatin interaction
ENSG00000143252	Chromatin interaction
ENSG00000235477	Chromatin interaction
ENSG00000158850	Chromatin interaction
ENSG00000158864	Chromatin interaction
ENSG00000188931	Chromatin interaction
ENSG00000215840	Chromatin interaction
ENSG00000143224	Chromatin interaction
ENSG00000158882	Chromatin interaction
ENSG00000143222	Chromatin interaction
ENSG00000263548	Chromatin interaction

Extended variants
information (count: 210 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:197)

rs_ID	r²[population]
rs10157158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10157457	0.89[ASN][1000 genomes]
rs10157990	0.88[ASN][1000 genomes]
rs10157991	0.87[ASN][1000 genomes]
rs10158388	0.96[ASN][1000 genomes]
rs10159083	0.95[ASN][1000 genomes]
rs10494350	0.92[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs10494351	0.92[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs10494352	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10494353	0.92[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs10494354	0.96[ASN][1000 genomes]
rs10494355	0.92[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1133805	0.92[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs1133806	0.96[ASN][1000 genomes]
rs11582439	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11588994	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12239492	0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12239719	0.96[ASN][1000 genomes]
rs12385723	0.92[ASN][1000 genomes]
rs12385733	0.96[ASN][1000 genomes]
rs12725465	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12730813	0.86[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12737323	0.83[ASN][1000 genomes]
rs12738660	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12745476	0.86[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12757174	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13374037	0.90[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs13375385	0.96[ASN][1000 genomes]
rs13375937	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13376158	0.96[ASN][1000 genomes]
rs16832809	0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs16832811	0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs16832813	0.92[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs16832817	0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16832820	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16832823	0.92[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16832824	0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs16832826	0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs16832835	0.92[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs16832842	0.92[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs16832846	0.96[ASN][1000 genomes]
rs16832851	0.92[CHB][hapmap];0.92[CHD][hapmap];0.88[JPT][hapmap];0.96[ASN][1000 genomes]
rs16832854	0.92[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs16832866	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs16832869	0.92[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs16832871	0.92[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs16832872	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs16832874	0.92[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs16832883	0.92[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs16832884	0.92[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs16832887	0.92[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs16832892	0.92[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs16832894	0.96[ASN][1000 genomes]
rs16832897	0.96[ASN][1000 genomes]
rs16832900	0.92[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs16832902	0.96[ASN][1000 genomes]
rs16832908	0.96[ASN][1000 genomes]
rs16832922	0.92[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs16832948	0.84[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs16832949	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs3087596	0.96[ASN][1000 genomes]
rs34538569	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34872203	0.94[ASN][1000 genomes]
rs35006684	0.96[ASN][1000 genomes]
rs35130144	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35215727	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35680024	0.95[ASN][1000 genomes]
rs3935401	0.92[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs4077289	0.96[ASN][1000 genomes]
rs4077290	0.92[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs4077629	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs4077631	0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs41270861	0.96[ASN][1000 genomes]
rs4255402	0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4255403	0.92[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs4291521	0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4319356	0.92[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs4360541	0.94[ASN][1000 genomes]
rs4400628	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4463689	0.92[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs4469725	0.94[ASN][1000 genomes]
rs4474277	0.90[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs4477296	0.94[ASN][1000 genomes]
rs4481873	0.92[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs4525064	0.96[ASN][1000 genomes]
rs4534403	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4534404	0.96[ASN][1000 genomes]
rs4534405	0.96[ASN][1000 genomes]
rs4585997	0.83[CHB][hapmap];0.88[JPT][hapmap];0.96[ASN][1000 genomes]
rs4600063	0.92[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs4622080	0.95[ASN][1000 genomes]
rs4631719	0.94[ASN][1000 genomes]
rs4634926	0.96[ASN][1000 genomes]
rs4634927	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.83[LWK][hapmap];0.94[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55674249	0.97[ASN][1000 genomes]
rs55682614	0.95[ASN][1000 genomes]
rs55690323	0.88[ASN][1000 genomes]
rs55698724	0.95[ASN][1000 genomes]
rs55729989	0.96[ASN][1000 genomes]
rs55747162	0.91[ASN][1000 genomes]
rs55775286	0.87[ASN][1000 genomes]
rs55783815	0.96[ASN][1000 genomes]
rs55807618	0.96[ASN][1000 genomes]
rs55809622	0.96[ASN][1000 genomes]
rs55839314	0.89[ASN][1000 genomes]
rs55898518	0.90[ASN][1000 genomes]
rs55929617	0.96[ASN][1000 genomes]
rs55955603	0.81[ASN][1000 genomes]
rs55961103	0.95[ASN][1000 genomes]
rs55962831	0.96[ASN][1000 genomes]
rs55981028	0.91[ASN][1000 genomes]
rs55996762	0.97[ASN][1000 genomes]
rs56007456	0.96[ASN][1000 genomes]
rs56028608	0.95[ASN][1000 genomes]
rs56062031	0.97[ASN][1000 genomes]
rs56071922	0.92[ASN][1000 genomes]
rs56122953	0.97[ASN][1000 genomes]
rs56169917	0.97[ASN][1000 genomes]
rs56269923	0.92[ASN][1000 genomes]
rs56280055	0.89[ASN][1000 genomes]
rs56290916	0.96[ASN][1000 genomes]
rs56291729	0.89[ASN][1000 genomes]
rs56355322	0.91[ASN][1000 genomes]
rs56358807	0.87[ASN][1000 genomes]
rs56406825	0.96[ASN][1000 genomes]
rs56411570	0.95[ASN][1000 genomes]
rs56868836	0.96[ASN][1000 genomes]
rs57007882	0.96[ASN][1000 genomes]
rs57154376	0.95[ASN][1000 genomes]
rs57270150	0.96[ASN][1000 genomes]
rs57306652	0.96[ASN][1000 genomes]
rs57421557	0.96[ASN][1000 genomes]
rs57473118	0.96[ASN][1000 genomes]
rs57474688	0.97[ASN][1000 genomes]
rs57835711	0.96[ASN][1000 genomes]
rs57841279	0.96[ASN][1000 genomes]
rs57858140	0.96[ASN][1000 genomes]
rs58055613	0.91[ASN][1000 genomes]
rs58138146	0.96[ASN][1000 genomes]
rs58418155	0.95[ASN][1000 genomes]
rs58758353	0.92[ASN][1000 genomes]
rs58840032	0.89[ASN][1000 genomes]
rs58842513	0.96[ASN][1000 genomes]
rs58874147	0.96[ASN][1000 genomes]
rs59037769	0.94[ASN][1000 genomes]
rs59191996	0.96[ASN][1000 genomes]
rs59340690	0.96[ASN][1000 genomes]
rs59544428	0.96[ASN][1000 genomes]
rs59559479	0.96[ASN][1000 genomes]
rs59690240	0.89[ASN][1000 genomes]
rs59747425	0.96[ASN][1000 genomes]
rs59774375	0.96[ASN][1000 genomes]
rs59840298	0.96[ASN][1000 genomes]
rs60078979	0.94[ASN][1000 genomes]
rs60179510	0.96[ASN][1000 genomes]
rs60261157	0.90[ASN][1000 genomes]
rs60309040	0.92[ASN][1000 genomes]
rs60345130	0.94[ASN][1000 genomes]
rs60382588	0.96[ASN][1000 genomes]
rs60405593	0.95[ASN][1000 genomes]
rs60435895	0.92[ASN][1000 genomes]
rs60792683	0.93[ASN][1000 genomes]
rs60799370	0.92[ASN][1000 genomes]
rs60882053	0.97[ASN][1000 genomes]
rs61181161	0.95[ASN][1000 genomes]
rs61219424	0.97[ASN][1000 genomes]
rs61299084	0.96[ASN][1000 genomes]
rs61304797	0.85[ASN][1000 genomes]
rs61308286	0.96[ASN][1000 genomes]
rs61410886	0.89[ASN][1000 genomes]
rs61447446	0.96[ASN][1000 genomes]
rs61461118	0.96[ASN][1000 genomes]
rs61576374	0.96[ASN][1000 genomes]
rs61608953	0.89[ASN][1000 genomes]
rs61618989	0.95[ASN][1000 genomes]
rs61653684	0.96[ASN][1000 genomes]
rs6668174	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6670076	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6675552	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6688180	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6693070	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7412460	0.92[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs74124931	0.97[ASN][1000 genomes]
rs74124933	0.89[ASN][1000 genomes]
rs74127622	0.95[ASN][1000 genomes]
rs74127629	0.97[ASN][1000 genomes]
rs74127630	0.97[ASN][1000 genomes]
rs74127635	0.97[ASN][1000 genomes]
rs74127636	0.97[ASN][1000 genomes]
rs74127638	0.96[ASN][1000 genomes]
rs74127639	0.96[ASN][1000 genomes]
rs74127641	0.96[ASN][1000 genomes]
rs74127657	0.96[ASN][1000 genomes]
rs74127658	0.96[ASN][1000 genomes]
rs7542784	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9330294	0.92[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs9970904	0.92[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432986	chr1:161221133-161673682	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1010776	chr1:161282384-161409218	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv432998	chr1:161335902-161673682	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
4	nsv872493	chr1:161339060-161413794	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
5	nsv433009	chr1:161343927-161639328	Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
6	nsv1005812	chr1:161343951-161548101	Weak transcription Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
7	nsv535182	chr1:161343951-161548101	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
8	esv2756866	chr1:161344255-161681552	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
9	esv2758972	chr1:161344255-161681552	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
10	nsv998957	chr1:161353351-161398414	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
11	nsv433020	chr1:161355634-161673682	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
12	esv2754329	chr1:161355728-161673682	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
13	nsv433031	chr1:161355728-161673682	Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs3934593	OR6N2	cis	cerebellum	SCAN
rs3934593	DDR2	cis	parietal	SCAN
rs3934593	FCGR2C	cis	Muscle Skeletal	GTEx
rs3934593	OR10R2	cis	parietal	SCAN
rs3934593	HSPA7	cis	Muscle Skeletal	GTEx

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161328400-161359000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:161328600-161359000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:161352600-161359200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:161352600-161359200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr1:161352800-161359200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr1:161353000-161359200	Weak transcription	HUVEC	blood vessel
7	chr1:161353000-161359200	Weak transcription	NHLF	lung
8	chr1:161353400-161359000	Weak transcription	Adipose Nuclei	Adipose
9	chr1:161353400-161359200	Weak transcription	Osteobl	bone
10	chr1:161353800-161359200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr1:161354000-161359200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:161354600-161359200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:161356000-161359200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr1:161356400-161359000	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr1:161356400-161359000	Weak transcription	Spleen	Spleen
16	chr1:161356400-161359200	Weak transcription	Primary T cells from cord blood	blood
17	chr1:161356600-161359200	Weak transcription	Liver	Liver
18	chr1:161356600-161359200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr1:161356800-161359000	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr1:161356800-161359200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr1:161357400-161359000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr1:161357400-161359000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr1:161357400-161359200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr1:161357600-161359200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr1:161358000-161359000	Weak transcription	Primary B cells from peripheral blood	blood
26	chr1:161358600-161359000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr1:161358600-161359000	Enhancers	NHEK	skin
28	chr1:161358600-161359200	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr1:161358600-161359200	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr1:161358600-161359200	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr1:161358600-161359200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr1:161358600-161359200	Enhancers	Fetal Thymus	thymus
33	chr1:161358600-161359200	Enhancers	Thymus	Thymus
34	chr1:161358600-161359200	Enhancers	A549	lung
35	chr1:161358600-161359400	Enhancers	Lung	lung
36	chr1:161358600-161359400	Enhancers	Stomach Mucosa	stomach
37	chr1:161358600-161359600	Flanking Active TSS	Hela-S3	cervix
38	chr1:161358800-161359000	Enhancers	Primary neutrophils fromperipheralblood	blood
39	chr1:161358800-161359000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr1:161358800-161359200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
41	chr1:161358800-161359200	Enhancers	Primary hematopoietic stem cells	blood
42	chr1:161358800-161359200	Enhancers	Primary T helper naive cells from peripheral blood	blood
43	chr1:161358800-161359200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr1:161358800-161359200	Enhancers	Dnd41	blood
45	chr1:161358800-161359200	Weak transcription	GM12878-XiMat	blood
46	chr1:161358800-161359200	Enhancers	HepG2	liver
47	chr1:161358800-161359200	Enhancers	HMEC	breast
48	chr1:161358800-161359400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
49	chr1:161358800-161359600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr1:161358800-161359600	Flanking Active TSS	K562	blood

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