The 2.0 version of rSNPBase

Variant report

Variant rs56280055
Chromosome Location chr1:161288081-161288082
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:121 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:161284800-161288600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr1:161284800-161289200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr1:161284800-161293600 Weak transcription Small Intestine intestine
4 chr1:161284800-161295000 Weak transcription Spleen Spleen
5 chr1:161284800-161300400 Weak transcription Aorta Aorta
6 chr1:161285000-161288200 Weak transcription Fetal Muscle Trunk muscle
7 chr1:161285000-161288200 Weak transcription Pancreas Pancrea
8 chr1:161285000-161288600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
9 chr1:161285000-161288600 Weak transcription Placenta Placenta
10 chr1:161285000-161288600 Weak transcription Ovary ovary
11 chr1:161285000-161293400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
12 chr1:161285000-161295600 Weak transcription Gastric stomach
13 chr1:161285000-161296600 Weak transcription Colonic Mucosa Colon
14 chr1:161285000-161298400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
15 chr1:161285000-161301800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
16 chr1:161285200-161288200 Weak transcription Primary monocytes fromperipheralblood blood
17 chr1:161285200-161289200 Weak transcription Sigmoid Colon Sigmoid Colon
18 chr1:161285200-161289400 Weak transcription Thymus Thymus
19 chr1:161285200-161293400 Weak transcription Fetal Brain Female brain
20 chr1:161285200-161293800 Weak transcription H9 Cell Line embryonic stem cell
21 chr1:161285200-161293800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
22 chr1:161285200-161293800 Weak transcription Adipose Nuclei Adipose
23 chr1:161285200-161293800 Weak transcription Fetal Muscle Leg muscle
24 chr1:161285200-161293800 Weak transcription Fetal Thymus thymus
25 chr1:161285200-161295400 Weak transcription Primary B cells from cord blood blood
26 chr1:161285200-161295400 Weak transcription Brain Substantia Nigra brain
27 chr1:161285200-161295400 Weak transcription Fetal Kidney kidney
28 chr1:161285200-161295400 Weak transcription Right Ventricle heart
29 chr1:161285200-161299200 Weak transcription Brain Inferior Temporal Lobe brain
30 chr1:161285200-161321400 Weak transcription Stomach Mucosa stomach
31 chr1:161285400-161288200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr1:161285400-161288200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
33 chr1:161285400-161288400 Weak transcription Fetal Stomach stomach
34 chr1:161285400-161288600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
35 chr1:161285400-161289200 Weak transcription Fetal Intestine Small intestine
36 chr1:161285400-161289400 Weak transcription Primary T regulatory cells fromperipheralblood blood
37 chr1:161285400-161289600 Weak transcription Monocytes-CD14+_RO01746 blood
38 chr1:161285400-161293200 Weak transcription Primary B cells from peripheral blood blood
39 chr1:161285400-161293200 Weak transcription Primary T helper cells fromperipheralblood blood
40 chr1:161285400-161293200 Weak transcription Muscle Satellite Cultured Cells --
41 chr1:161285400-161293400 Weak transcription Primary T helper naive cells fromperipheralblood blood
42 chr1:161285400-161293800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
43 chr1:161285400-161293800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
44 chr1:161285400-161293800 Weak transcription Primary neutrophils fromperipheralblood blood
45 chr1:161285400-161293800 Weak transcription Primary hematopoietic stem cells short term culture blood
46 chr1:161285400-161293800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
47 chr1:161285400-161293800 Weak transcription Brain Angular Gyrus brain
48 chr1:161285400-161293800 Weak transcription Colon Smooth Muscle Colon
49 chr1:161285400-161293800 Weak transcription Fetal Lung lung
50 chr1:161285400-161293800 Weak transcription Placenta Amnion Placenta Amnion

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Last update: Aug 31, 2015