The 2.0 version of rSNPBase

Variant report

Variant rs59840298
Chromosome Location chr1:161338584-161338585
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:51 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:161304600-161342600 Weak transcription Esophagus oesophagus
2 chr1:161312600-161341200 Weak transcription HMEC breast
3 chr1:161313000-161341000 Weak transcription H9 Cell Line embryonic stem cell
4 chr1:161313000-161341200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr1:161321800-161348800 Weak transcription Gastric stomach
6 chr1:161327200-161339200 Weak transcription NHLF lung
7 chr1:161327400-161352600 Weak transcription Lung lung
8 chr1:161327600-161338600 Weak transcription Rectal Mucosa Donor 31 rectum
9 chr1:161328400-161359000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
10 chr1:161328600-161359000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
11 chr1:161334000-161342000 Weak transcription Aorta Aorta
12 chr1:161335000-161356000 Weak transcription K562 blood
13 chr1:161336400-161339600 Weak transcription Adipose Nuclei Adipose
14 chr1:161336400-161339800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
15 chr1:161336400-161341600 Weak transcription Primary T cells from cord blood blood
16 chr1:161336400-161342600 Weak transcription Primary neutrophils fromperipheralblood blood
17 chr1:161336400-161348800 Weak transcription Placenta Placenta
18 chr1:161336600-161340200 Weak transcription Hela-S3 cervix
19 chr1:161336600-161351600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
20 chr1:161336600-161352200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
21 chr1:161336600-161352200 Weak transcription Skeletal Muscle Female skeletal muscle
22 chr1:161336800-161338600 Enhancers Liver Liver
23 chr1:161336800-161338600 Weak transcription Sigmoid Colon Sigmoid Colon
24 chr1:161336800-161338600 Weak transcription Thymus Thymus
25 chr1:161336800-161338800 Weak transcription Fetal Stomach stomach
26 chr1:161336800-161339000 Weak transcription HSMM muscle
27 chr1:161336800-161339200 Weak transcription Fetal Muscle Trunk muscle
28 chr1:161336800-161339800 Weak transcription Duodenum Mucosa Duodenum
29 chr1:161336800-161340200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
30 chr1:161336800-161340400 Weak transcription Primary monocytes fromperipheralblood blood
31 chr1:161336800-161341600 Weak transcription Monocytes-CD14+_RO01746 blood
32 chr1:161336800-161344600 Weak transcription Stomach Smooth Muscle stomach
33 chr1:161336800-161348600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
34 chr1:161336800-161348800 Weak transcription Fetal Muscle Leg muscle
35 chr1:161336800-161348800 Weak transcription Fetal Thymus thymus
36 chr1:161336800-161351600 Weak transcription NHEK skin
37 chr1:161337000-161338600 Enhancers HepG2 liver
38 chr1:161337200-161341600 Weak transcription Primary T cells fromperipheralblood blood
39 chr1:161337400-161338600 Enhancers Brain Substantia Nigra brain
40 chr1:161337400-161338600 Enhancers Fetal Adrenal Gland Adrenal Gland
41 chr1:161337800-161348800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
42 chr1:161337800-161356200 Weak transcription Primary T helper cells fromperipheralblood blood
43 chr1:161338000-161343400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
44 chr1:161338000-161346000 Weak transcription HUES48 Cell Line embryonic stem cell
45 chr1:161338000-161351600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
46 chr1:161338000-161356000 Weak transcription GM12878-XiMat blood
47 chr1:161338200-161340000 Weak transcription Dnd41 blood
48 chr1:161338200-161340200 Weak transcription Osteobl bone
49 chr1:161338200-161342000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
50 chr1:161338200-161344000 Weak transcription Primary hematopoietic stem cells short term culture blood

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Last update: Aug 31, 2015