The 2.0 version of rSNPBase

Variant report

Variant rs6688180
Chromosome Location chr1:161360988-161360989
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:69 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:161359200-161361000 Active TSS Brain Angular Gyrus brain
2 chr1:161359200-161361000 Active TSS Brain Anterior Caudate brain
3 chr1:161359200-161361200 Active TSS H9 Derived Neuron Cultured Cells ES cell derived
4 chr1:161359200-161361200 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
5 chr1:161359400-161361000 Active TSS A549 lung
6 chr1:161360200-161361000 Bivalent/Poised TSS HUES64 Cell Line embryonic stem cell
7 chr1:161360200-161361000 Flanking Active TSS Primary T helper cells PMA-I stimulated --
8 chr1:161360200-161361000 Flanking Active TSS Primary T helper cells fromperipheralblood blood
9 chr1:161360200-161361000 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
10 chr1:161360200-161361000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
11 chr1:161360200-161361000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
12 chr1:161360400-161361000 Bivalent/Poised TSS iPS-15b Cell Line embryonic stem cell
13 chr1:161360400-161361000 Flanking Active TSS Cortex derived primary cultured neurospheres brain
14 chr1:161360400-161361000 Flanking Active TSS Brain Germinal Matrix brain
15 chr1:161360400-161361200 Flanking Active TSS Dnd41 blood
16 chr1:161360600-161361000 Enhancers ES-UCSF4 Cell Line embryonic stem cell
17 chr1:161360600-161361000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
18 chr1:161360600-161361000 Enhancers Primary B cells from peripheral blood blood
19 chr1:161360600-161361000 Enhancers Primary T helper naive cells from peripheral blood blood
20 chr1:161360600-161361000 Enhancers Primary T helper naive cells fromperipheralblood blood
21 chr1:161360600-161361000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
22 chr1:161360600-161361000 Enhancers Primary T helper 17 cells PMA-I stimulated --
23 chr1:161360600-161361000 Enhancers Primary T killer naive cells fromperipheralblood blood
24 chr1:161360600-161361000 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
25 chr1:161360600-161361000 Flanking Active TSS Fetal Brain Female brain
26 chr1:161360600-161361000 Enhancers HepG2 liver
27 chr1:161360600-161361200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
28 chr1:161360600-161368800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
29 chr1:161360600-161368800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
30 chr1:161360600-161368800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
31 chr1:161360600-161368800 Weak transcription Ovary ovary
32 chr1:161360800-161361000 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
33 chr1:161360800-161361000 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
34 chr1:161360800-161361000 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
35 chr1:161360800-161361000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
36 chr1:161360800-161361000 Enhancers Primary neutrophils fromperipheralblood blood
37 chr1:161360800-161361000 Active TSS Primary B cells from cord blood blood
38 chr1:161360800-161361000 Enhancers Primary T cells from cord blood blood
39 chr1:161360800-161361000 Enhancers Primary hematopoietic stem cells blood
40 chr1:161360800-161361000 Enhancers Primary T regulatory cells fromperipheralblood blood
41 chr1:161360800-161361000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
42 chr1:161360800-161361000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
43 chr1:161360800-161361000 Enhancers Adipose Nuclei Adipose
44 chr1:161360800-161361000 Flanking Active TSS Brain Cingulate Gyrus brain
45 chr1:161360800-161361000 Enhancers Brain Hippocampus Middle brain
46 chr1:161360800-161361000 Enhancers Colon Smooth Muscle Colon
47 chr1:161360800-161361000 Enhancers Duodenum Mucosa Duodenum
48 chr1:161360800-161361000 Enhancers Duodenum Smooth Muscle Duodenum
49 chr1:161360800-161361000 Enhancers Fetal Heart heart
50 chr1:161360800-161361000 Enhancers Fetal Stomach stomach

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Last update: Aug 31, 2015