Variant report

Variant	rs6724337
Chromosome Location	chr2:172735329-172735330
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:172734552..172737535-chr2:172742363..172744070,2	K562	blood:
2	chr2:172722204..172724793-chr2:172734963..172736476,2	K562	blood:
3	chr2:172733666..172736692-chr2:172737293..172740256,4	K562	blood:
4	chr2:172733649..172740490-chr2:172749209..172752081,6	MCF-7	breast:
5	chr2:172734512..172736409-chr2:172778831..172780344,2	K562	blood:
6	chr2:172734512..172737227-chr2:172778831..172780357,3	K562	blood:

Variant related genes	Relation type
ENSG00000115840	Chromatin interaction
ENSG00000128708	Chromatin interaction

Extended variants
information (count: 105 )
Associated
traits (count: 19 )

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10165126	0.93[ASW][hapmap]
rs10166005	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10167419	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.93[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10174055	0.87[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];0.81[JPT][hapmap];0.85[MEX][hapmap];0.85[MKK][hapmap]
rs10174525	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10184866	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10194102	1.00[CEU][hapmap];0.81[CHB][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10200608	0.96[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10201419	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10202823	0.87[CEU][hapmap];0.82[CHB][hapmap];0.89[CHD][hapmap];0.88[GIH][hapmap];0.81[JPT][hapmap];0.85[MEX][hapmap];0.83[MKK][hapmap]
rs10204502	0.88[AMR][1000 genomes]
rs10204622	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10206062	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10207085	0.87[ASW][hapmap];1.00[CEU][hapmap];0.82[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10432423	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10497374	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10803863	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10930502	0.91[CEU][hapmap]
rs1105265	0.82[GIH][hapmap]
rs1113389	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11678984	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11757	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11886820	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11897196	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11904009	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12053003	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12185567	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12692970	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12692973	0.93[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12692974	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12692978	1.00[ASW][hapmap];0.87[CEU][hapmap];0.82[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.97[LWK][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13017585	0.96[GIH][hapmap];0.82[MKK][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13018768	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13022113	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13419987	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13429113	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13429409	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1474074	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1554166	0.87[ASW][hapmap];1.00[CEU][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1973706	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2292815	1.00[CEU][hapmap];0.81[JPT][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2357061	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2674484	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2678155	0.86[AMR][1000 genomes]
rs312916	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs312918	1.00[CEU][hapmap];0.82[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.86[MEX][hapmap];0.92[TSI][hapmap];0.80[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs312919	0.88[AMR][1000 genomes]
rs312921	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs312924	0.81[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs312925	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34358700	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34542126	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35379278	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35391289	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35549875	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35854280	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs36057702	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3770445	1.00[ASW][hapmap];0.96[CEU][hapmap];0.88[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3770451	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3770452	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3795999	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4667693	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4667694	1.00[CEU][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.93[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4668412	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4668414	1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6433311	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6433314	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6433319	0.93[ASW][hapmap];0.87[CEU][hapmap];0.85[MEX][hapmap]
rs66835971	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6705200	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6709156	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6710698	0.96[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.80[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6715929	0.80[ASW][hapmap];0.83[CEU][hapmap]
rs67204065	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6721680	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.94[TSI][hapmap];0.80[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6722757	1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6725388	0.88[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6727017	0.83[CEU][hapmap]
rs6731562	0.93[ASW][hapmap];0.87[CEU][hapmap];0.85[MEX][hapmap]
rs6738445	0.92[CEU][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes]
rs6745143	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6752812	0.81[CHD][hapmap];0.88[GIH][hapmap];0.83[MKK][hapmap]
rs6754817	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6757773	1.00[CEU][hapmap];0.81[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6758704	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6759575	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71013062	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7355523	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7355594	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7562356	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7572215	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7573003	0.92[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7586207	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHD][hapmap];0.91[GIH][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.93[YRI][hapmap];0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7597387	1.00[CEU][hapmap];0.81[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7604918	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7608403	1.00[CEU][hapmap];0.82[CHD][hapmap];0.91[GIH][hapmap];0.86[MEX][hapmap];0.92[TSI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs908670	1.00[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs908671	0.96[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs973889	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834457	chr2:172564939-172770901	Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv583611	chr2:172683481-172750257	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv1006214	chr2:172691689-172754296	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
4	nsv536036	chr2:172691689-172754296	Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
5	nsv875410	chr2:172693780-172896587	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv875411	chr2:172693780-172942448	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:19)

SNP	Gene	Cis/trans	Tissue	Source
rs6724337	AC068039.4	cis	Whole Blood	GTEx
rs6724337	AC068039.4	cis	Skin Sun Exposed Lower leg	GTEx
rs6724337	MAP1D	cis	parietal	SCAN
rs6724337	AC068039.4	cis	lung	GTEx
rs6724337	SLC25A12	cis	parietal	SCAN
rs6724337	AC068039.4	cis	Thyroid	GTEx
rs6724337	AC068039.4	cis	Muscle Skeletal	GTEx
rs6724337	DYNC1I2	cis	cerebellum	SCAN
rs6724337	SLC25A12	Cis_1M	lymphoblastoid	RTeQTL
rs6724337	AC068039.4	cis	Esophagus Muscularis	GTEx
rs6724337	AC068039.4	cis	Adipose Subcutaneous	GTEx
rs6724337	SLC25A12	cis	lymphoblastoid	seeQTL
rs6724337	AC068039.4	cis	Esophagus Mucosa	GTEx
rs6724337	MYO3B	cis	cerebellum	SCAN
rs6724337	AC068039.4	cis	Stomach	GTEx
rs6724337	AC068039.4	cis	Heart Left Ventricle	GTEx
rs6724337	SLC25A12	cis	multi-tissue	Pritchard
rs6724337	AC068039.4	cis	Nerve Tibial	GTEx
rs6724337	SLC25A12	cis	cerebellum	SCAN

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172690200-172750200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:172691400-172738600	Weak transcription	Esophagus	oesophagus
3	chr2:172709600-172749600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr2:172709600-172749600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr2:172710800-172747800	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr2:172711600-172740000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr2:172712200-172749200	Weak transcription	Hela-S3	cervix
8	chr2:172712400-172738200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr2:172716600-172736600	Weak transcription	Ovary	ovary
10	chr2:172721200-172749600	Weak transcription	Thymus	Thymus
11	chr2:172724000-172749600	Weak transcription	Small Intestine	intestine
12	chr2:172724800-172749600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr2:172725400-172749800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr2:172725800-172749600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr2:172727800-172738600	Weak transcription	Dnd41	blood
16	chr2:172731400-172746400	Weak transcription	Fetal Lung	lung
17	chr2:172731600-172749600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr2:172731800-172740600	Weak transcription	Fetal Stomach	stomach
19	chr2:172731800-172746400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr2:172732000-172736000	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr2:172732000-172736200	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr2:172732000-172738600	Weak transcription	Primary T cells from cord blood	blood
23	chr2:172732000-172746000	Weak transcription	Fetal Brain Female	brain
24	chr2:172732000-172746400	Weak transcription	Fetal Muscle Leg	muscle
25	chr2:172732000-172746400	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr2:172732000-172746600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr2:172732000-172748800	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr2:172732000-172749400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr2:172732000-172749400	Weak transcription	A549	lung
30	chr2:172732000-172749600	Weak transcription	Primary B cells from peripheral blood	blood
31	chr2:172732000-172749800	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr2:172732000-172749800	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr2:172732000-172750000	Weak transcription	Fetal Muscle Trunk	muscle
34	chr2:172732200-172746400	Weak transcription	Primary B cells from cord blood	blood
35	chr2:172732200-172749600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr2:172732400-172749600	Weak transcription	Fetal Kidney	kidney
37	chr2:172732400-172749800	Weak transcription	Fetal Thymus	thymus
38	chr2:172732600-172747000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr2:172732800-172737400	Enhancers	Fetal Heart	heart
40	chr2:172733000-172746400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr2:172733000-172749200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr2:172733000-172749400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr2:172733800-172737200	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr2:172734400-172735400	Enhancers	Duodenum Smooth Muscle	Duodenum
45	chr2:172734400-172735800	Enhancers	K562	blood
46	chr2:172734400-172736600	Enhancers	Rectal Smooth Muscle	rectum
47	chr2:172734400-172736600	Enhancers	Osteobl	bone
48	chr2:172734600-172735400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr2:172734600-172735400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
50	chr2:172734600-172735400	Enhancers	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links