Variant report

Variant	rs67251788
Chromosome Location	chr3:34477022-34477023
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PDCD6IP-2	chr3:34476785-34477124	XLOC_002612
2	lnc-PDCD6IP-2	chr3:34476785-34477097	XLOC_002612

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1013979	0.92[ASN][1000 genomes]
rs1191622	0.94[ASN][1000 genomes]
rs1191624	0.86[ASN][1000 genomes]
rs1211518	0.94[ASN][1000 genomes]
rs1212278	0.86[ASN][1000 genomes]
rs12186048	0.90[ASN][1000 genomes]
rs12487411	0.94[ASN][1000 genomes]
rs12629841	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13083647	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1317104	0.94[ASN][1000 genomes]
rs1358615	0.94[ASN][1000 genomes]
rs1358616	0.93[ASN][1000 genomes]
rs1406568	0.94[ASN][1000 genomes]
rs1518885	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1518886	0.92[ASN][1000 genomes]
rs1518887	0.94[ASN][1000 genomes]
rs1529075	0.98[ASN][1000 genomes]
rs17031629	0.90[ASN][1000 genomes]
rs17031637	0.94[ASN][1000 genomes]
rs1881685	0.90[ASN][1000 genomes]
rs1919621	0.94[ASN][1000 genomes]
rs1919622	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1949470	0.94[ASN][1000 genomes]
rs2077806	0.92[ASN][1000 genomes]
rs2167040	0.89[ASN][1000 genomes]
rs2218729	0.88[ASN][1000 genomes]
rs2951002	0.89[ASN][1000 genomes]
rs34843235	0.93[ASN][1000 genomes]
rs34896219	0.94[ASN][1000 genomes]
rs35236754	0.84[ASN][1000 genomes]
rs35289126	0.80[EUR][1000 genomes]
rs35488362	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35703530	0.94[ASN][1000 genomes]
rs35905703	0.89[ASN][1000 genomes]
rs35929503	0.94[ASN][1000 genomes]
rs4533591	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6804250	0.88[ASN][1000 genomes]
rs9816663	0.88[ASN][1000 genomes]
rs9824579	0.93[ASN][1000 genomes]
rs9842247	0.92[ASN][1000 genomes]
rs9858557	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv876683	chr3:34451940-34536095	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1007906	chr3:34466966-34607465	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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