Variant report

Variant	rs1358616
Chromosome Location	chr3:34530525-34530526
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1013979	0.86[ASN][1000 genomes]
rs1191622	0.87[ASN][1000 genomes]
rs1191624	0.81[ASN][1000 genomes]
rs1211518	0.87[ASN][1000 genomes]
rs1212278	0.81[ASN][1000 genomes]
rs12186048	0.83[ASN][1000 genomes]
rs12487411	0.87[ASN][1000 genomes]
rs12629841	0.85[ASN][1000 genomes]
rs12632962	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13083647	0.85[ASN][1000 genomes]
rs1317104	0.88[ASN][1000 genomes]
rs1358615	0.87[ASN][1000 genomes]
rs1406568	0.87[ASN][1000 genomes]
rs1518885	0.92[ASN][1000 genomes]
rs1518886	0.85[ASN][1000 genomes]
rs1518887	0.87[ASN][1000 genomes]
rs1529075	0.91[ASN][1000 genomes]
rs17031629	0.83[ASN][1000 genomes]
rs17031637	0.87[ASN][1000 genomes]
rs1881685	0.85[ASN][1000 genomes]
rs1919621	0.87[ASN][1000 genomes]
rs1919622	0.85[ASN][1000 genomes]
rs1949470	0.87[ASN][1000 genomes]
rs2077806	0.86[ASN][1000 genomes]
rs2167040	0.96[ASN][1000 genomes]
rs2218729	0.94[ASN][1000 genomes]
rs2951002	0.83[ASN][1000 genomes]
rs34843235	0.86[ASN][1000 genomes]
rs34896219	0.87[ASN][1000 genomes]
rs35236754	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35289126	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35488362	0.89[ASN][1000 genomes]
rs35703530	0.87[ASN][1000 genomes]
rs35905703	0.96[ASN][1000 genomes]
rs35929503	0.87[ASN][1000 genomes]
rs4533591	0.88[ASN][1000 genomes]
rs67251788	0.93[ASN][1000 genomes]
rs6804250	0.95[ASN][1000 genomes]
rs73058737	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9816663	0.94[ASN][1000 genomes]
rs9824579	0.88[ASN][1000 genomes]
rs9842247	0.87[ASN][1000 genomes]
rs9858557	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876683	chr3:34451940-34536095	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1007906	chr3:34466966-34607465	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv876684	chr3:34502652-34566947	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1358616	GOLGA4	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34525400-34533200	Weak transcription	Aorta	Aorta

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