Variant report

Variant rs7259466
Chromosome Location chr19:53239369-53239370
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:67 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:53237200-53239400 Active TSS HSMM muscle
2 chr19:53237200-53239400 Active TSS HSMMtube muscle
3 chr19:53237400-53239400 Active TSS Breast Myoepithelial Primary Cells Breast
4 chr19:53237400-53239400 Active TSS Right Atrium heart
5 chr19:53237600-53239800 Active TSS Colonic Mucosa Colon
6 chr19:53237800-53239800 Active TSS Duodenum Mucosa Duodenum
7 chr19:53238400-53239400 Flanking Active TSS Adipose Nuclei Adipose
8 chr19:53238400-53239600 Enhancers HUVEC blood vessel
9 chr19:53238400-53239800 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
10 chr19:53238400-53239800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr19:53238400-53240600 Weak transcription Lung lung
12 chr19:53238400-53244600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
13 chr19:53238600-53239400 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
14 chr19:53238600-53239400 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
15 chr19:53238600-53239400 Enhancers Primary T helper naive cells from peripheral blood blood
16 chr19:53238600-53239400 Enhancers Primary T helper 17 cells PMA-I stimulated --
17 chr19:53238600-53239400 Flanking Active TSS Rectal Mucosa Donor 31 rectum
18 chr19:53238600-53239400 Flanking Active TSS Stomach Smooth Muscle stomach
19 chr19:53238600-53240800 Weak transcription Placenta Amnion Placenta Amnion
20 chr19:53238800-53239400 Enhancers Primary T helper cells fromperipheralblood blood
21 chr19:53238800-53239400 Enhancers Cortex derived primary cultured neurospheres brain
22 chr19:53238800-53239400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
23 chr19:53238800-53239400 Flanking Active TSS Brain Hippocampus Middle brain
24 chr19:53238800-53239400 Flanking Active TSS Brain Inferior Temporal Lobe brain
25 chr19:53238800-53239400 Flanking Active TSS Brain Substantia Nigra brain
26 chr19:53238800-53239400 Enhancers Fetal Brain Male brain
27 chr19:53238800-53239400 Enhancers Fetal Intestine Small intestine
28 chr19:53238800-53239400 Enhancers Fetal Muscle Leg muscle
29 chr19:53238800-53239400 Enhancers Fetal Stomach stomach
30 chr19:53238800-53239400 Enhancers Right Ventricle heart
31 chr19:53238800-53239400 Enhancers Dnd41 blood
32 chr19:53238800-53239800 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
33 chr19:53238800-53239800 Enhancers Primary T cells from cord blood blood
34 chr19:53238800-53239800 Enhancers Primary T cells fromperipheralblood blood
35 chr19:53238800-53239800 Enhancers Fetal Adrenal Gland Adrenal Gland
36 chr19:53238800-53239800 Enhancers Fetal Intestine Large intestine
37 chr19:53238800-53239800 Enhancers Fetal Muscle Trunk muscle
38 chr19:53238800-53239800 Enhancers Left Ventricle heart
39 chr19:53238800-53239800 Enhancers Pancreas Pancrea
40 chr19:53239000-53239400 Flanking Active TSS HUES64 Cell Line embryonic stem cell
41 chr19:53239000-53239400 Enhancers Primary T helper cells PMA-I stimulated --
42 chr19:53239000-53239400 Enhancers Primary T killer memory cells from peripheral blood blood
43 chr19:53239000-53239400 Flanking Active TSS Brain Cingulate Gyrus brain
44 chr19:53239000-53239800 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
45 chr19:53239000-53239800 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
46 chr19:53239000-53243800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
47 chr19:53239200-53239400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
48 chr19:53239200-53239400 Active TSS Brain Anterior Caudate brain
49 chr19:53239200-53239400 Enhancers Brain Dorsolateral Prefrontal Cortex brain
50 chr19:53239200-53239400 Flanking Active TSS Duodenum Smooth Muscle Duodenum

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