Variant report

Variant	rs72977310
Chromosome Location	chr6:129076459-129076460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1508448	1.00[ASN][1000 genomes]
rs1949003	1.00[ASN][1000 genomes]
rs28513684	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55986700	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60999252	0.87[EUR][1000 genomes]
rs6569556	0.94[EUR][1000 genomes]
rs72975313	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72975384	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72975393	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72975394	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72975400	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs774281	1.00[ASN][1000 genomes]
rs7746855	1.00[ASN][1000 genomes]
rs7753205	1.00[ASN][1000 genomes]
rs7764078	1.00[ASN][1000 genomes]
rs7764948	1.00[ASN][1000 genomes]
rs9321130	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321133	1.00[ASN][1000 genomes]
rs9388665	1.00[ASN][1000 genomes]
rs9482917	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9482918	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9482919	1.00[ASN][1000 genomes]
rs9482920	1.00[ASN][1000 genomes]
rs9492057	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492059	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492060	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492061	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492062	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492063	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492064	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492065	1.00[ASN][1000 genomes]
rs9492066	1.00[ASN][1000 genomes]
rs9492067	1.00[ASN][1000 genomes]
rs9492068	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492069	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492070	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492071	1.00[ASN][1000 genomes]
rs9492073	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9492074	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030330	chr6:129008538-129095108	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv933689	chr6:129075729-129208730	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:129064400-129089200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:129074400-129078000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:129074600-129078000	Weak transcription	NHEK	skin
4	chr6:129076400-129076600	Flanking Active TSS	GM12878-XiMat	blood

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