Variant report

Variant	rs73485922
Chromosome Location	chr11:58155716-58155717
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs58433279	0.85[AMR][1000 genomes]
rs58454093	0.85[AMR][1000 genomes]
rs59856964	0.85[AMR][1000 genomes]
rs73470711	0.85[AMR][1000 genomes]
rs73470713	0.85[AMR][1000 genomes]
rs73470722	0.85[AMR][1000 genomes]
rs73470723	0.85[AMR][1000 genomes]
rs73470726	0.85[AMR][1000 genomes]
rs73470731	0.85[AMR][1000 genomes]
rs73470732	0.85[AMR][1000 genomes]
rs73484129	0.81[AFR][1000 genomes]
rs73484175	0.92[AFR][1000 genomes]
rs73484181	0.92[AFR][1000 genomes]
rs73484194	0.92[AFR][1000 genomes]
rs73485926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73485934	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73485945	0.85[AMR][1000 genomes]
rs73487714	0.85[AMR][1000 genomes]
rs73487735	0.85[AMR][1000 genomes]
rs73487737	0.85[AMR][1000 genomes]
rs73487770	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv517849	chr11:58129053-58264181	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv1042491	chr11:58134936-58263639	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1037213	chr11:58142913-58178810	Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58155400-58155800	Enhancers	HSMMtube	muscle
2	chr11:58155600-58156400	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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