Variant report
| Variant | rs73487714 |
|---|---|
| Chromosome Location | chr11:58250249-58250250 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:58244849..58247132-chr11:58250065..58252889,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs58433279 | 1.00[AMR][1000 genomes] |
| rs58454093 | 1.00[AMR][1000 genomes] |
| rs59856964 | 1.00[AMR][1000 genomes] |
| rs60604857 | 0.80[AFR][1000 genomes] |
| rs73470711 | 1.00[AMR][1000 genomes] |
| rs73470713 | 1.00[AMR][1000 genomes] |
| rs73470722 | 1.00[AMR][1000 genomes] |
| rs73470723 | 1.00[AMR][1000 genomes] |
| rs73470726 | 1.00[AMR][1000 genomes] |
| rs73470731 | 1.00[AMR][1000 genomes] |
| rs73470732 | 1.00[AMR][1000 genomes] |
| rs73470748 | 1.00[AMR][1000 genomes] |
| rs73470749 | 1.00[AMR][1000 genomes] |
| rs73470751 | 1.00[AMR][1000 genomes] |
| rs73470756 | 1.00[AMR][1000 genomes] |
| rs73470758 | 0.85[AMR][1000 genomes] |
| rs73472048 | 0.83[AMR][1000 genomes] |
| rs73484122 | 0.85[AFR][1000 genomes] |
| rs73485922 | 0.85[AMR][1000 genomes] |
| rs73485926 | 0.85[AMR][1000 genomes] |
| rs73485934 | 0.85[AMR][1000 genomes] |
| rs73485945 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73487735 | 1.00[AMR][1000 genomes] |
| rs73487737 | 1.00[AMR][1000 genomes] |
| rs73487770 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1054205 | chr11:57544264-58358509 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 67 gene(s) | inside rSNPs | diseases |
| 2 | nsv517849 | chr11:58129053-58264181 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv1042491 | chr11:58134936-58263639 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv976518 | chr11:58247628-58271109 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:58250000-58250600 | Enhancers | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
