Variant report

Variant	rs73470748
Chromosome Location	chr11:58395949-58395950
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:58345069..58346999-chr11:58395719..58399095,3	MCF-7	breast:
2	chr11:58391033..58393588-chr11:58395119..58397288,2	MCF-7	breast:
3	chr11:58395680..58396185-chr11:58403814..58404411,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CNTF-2	chr11:58394908-58396001	NONHSAT021478

Variant related genes	Relation type
ENSG00000110031	Chromatin interaction
ENSG00000186660	Chromatin interaction
ENSG00000255073	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs58433279	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58454093	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59856964	1.00[AMR][1000 genomes]
rs73470711	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470713	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470722	1.00[AMR][1000 genomes]
rs73470723	1.00[AMR][1000 genomes]
rs73470726	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470758	0.85[AMR][1000 genomes]
rs73472048	0.83[AMR][1000 genomes]
rs73485934	0.85[AMR][1000 genomes]
rs73485945	1.00[AMR][1000 genomes]
rs73487714	1.00[AMR][1000 genomes]
rs73487735	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73487737	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73487770	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832168	chr11:58394060-58564651	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58376600-58396200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:58377200-58397200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr11:58385200-58397000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:58385600-58400400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr11:58386800-58400000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr11:58391800-58397400	Genic enhancers	HSMM	muscle
7	chr11:58392000-58396000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:58392000-58397000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:58392000-58406000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:58392200-58397600	Weak transcription	Esophagus	oesophagus
11	chr11:58392200-58399200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr11:58392200-58400800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:58392400-58397200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr11:58392400-58402000	Weak transcription	Fetal Intestine Small	intestine
15	chr11:58392600-58400600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr11:58392800-58396000	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr11:58392800-58396600	Weak transcription	Fetal Brain Male	brain
18	chr11:58392800-58397600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:58392800-58399400	Weak transcription	Lung	lung
20	chr11:58393000-58396000	Enhancers	NHLF	lung
21	chr11:58393000-58397400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr11:58393000-58397600	Weak transcription	Spleen	Spleen
23	chr11:58393000-58398600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:58393000-58400000	Weak transcription	Ovary	ovary
25	chr11:58393000-58407200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr11:58393200-58398600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr11:58393200-58398600	Weak transcription	Fetal Stomach	stomach
28	chr11:58393200-58399600	Weak transcription	Right Ventricle	heart
29	chr11:58393200-58400200	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr11:58393200-58407000	Weak transcription	Thymus	Thymus
31	chr11:58393400-58396200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr11:58393400-58397600	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr11:58393600-58396600	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr11:58393600-58399000	Weak transcription	Pancreas	Pancrea
35	chr11:58393800-58396200	Weak transcription	Gastric	stomach
36	chr11:58393800-58396800	Weak transcription	Primary B cells from cord blood	blood
37	chr11:58393800-58397000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr11:58393800-58397200	Enhancers	NHDF-Ad	bronchial
39	chr11:58393800-58397800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr11:58393800-58399400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr11:58393800-58401000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr11:58393800-58406200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr11:58393800-58407800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr11:58394000-58396800	Weak transcription	Brain Germinal Matrix	brain
45	chr11:58394000-58397000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr11:58394000-58398400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr11:58394000-58398800	Weak transcription	Fetal Brain Female	brain
48	chr11:58394000-58399400	Weak transcription	Liver	Liver
49	chr11:58394000-58399800	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr11:58394000-58407200	Weak transcription	Left Ventricle	heart

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