Variant report

Variant	rs73470726
Chromosome Location	chr11:58352250-58352251
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:58346682..58349272-chr11:58349301..58352571,4	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs58433279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58454093	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59856964	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470722	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470723	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470731	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470732	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470748	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470749	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470751	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470756	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470758	0.85[AMR][1000 genomes]
rs73472048	0.83[AMR][1000 genomes]
rs73485922	0.85[AMR][1000 genomes]
rs73485926	0.85[AMR][1000 genomes]
rs73485934	0.85[AMR][1000 genomes]
rs73485945	1.00[AMR][1000 genomes]
rs73487714	1.00[AMR][1000 genomes]
rs73487735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73487737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73487770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58347600-58360200	Weak transcription	Esophagus	oesophagus
2	chr11:58347600-58361400	Weak transcription	Gastric	stomach
3	chr11:58347600-58379600	Weak transcription	Pancreas	Pancrea
4	chr11:58347600-58379800	Weak transcription	Lung	lung
5	chr11:58347600-58380200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:58347800-58377200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr11:58347800-58380200	Weak transcription	Aorta	Aorta
8	chr11:58348200-58352800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr11:58348200-58377400	Weak transcription	Fetal Kidney	kidney
10	chr11:58348600-58352400	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr11:58348600-58352600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr11:58348600-58352800	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr11:58348600-58360200	Weak transcription	Stomach Mucosa	stomach
14	chr11:58348800-58352400	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr11:58348800-58352600	Enhancers	Primary T cells from cord blood	blood
16	chr11:58348800-58354600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:58349000-58352600	Weak transcription	Osteobl	bone
18	chr11:58349000-58352800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:58349000-58353000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr11:58349000-58358200	Weak transcription	Ovary	ovary
21	chr11:58349000-58359200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:58349000-58359800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr11:58349000-58360000	Weak transcription	Stomach Smooth Muscle	stomach
24	chr11:58349000-58360200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr11:58349200-58352600	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr11:58349200-58352800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr11:58349200-58359200	Weak transcription	Fetal Muscle Leg	muscle
28	chr11:58349200-58359200	Weak transcription	Fetal Stomach	stomach
29	chr11:58349200-58360200	Weak transcription	Left Ventricle	heart
30	chr11:58349200-58363200	Weak transcription	Brain Germinal Matrix	brain
31	chr11:58349200-58377400	Weak transcription	HSMMtube	muscle
32	chr11:58349200-58379600	Weak transcription	Spleen	Spleen
33	chr11:58349200-58380600	Weak transcription	Fetal Brain Male	brain
34	chr11:58349200-58384200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr11:58349200-58384800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr11:58349400-58352800	Weak transcription	Placenta	Placenta
37	chr11:58349400-58353000	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr11:58349400-58353600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr11:58349400-58359200	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr11:58349400-58360000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr11:58349400-58367600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr11:58349600-58352800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
43	chr11:58349600-58353000	Weak transcription	Fetal Intestine Large	intestine
44	chr11:58349600-58353600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr11:58349600-58353600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr11:58349600-58353600	Weak transcription	Psoas Muscle	Psoas
47	chr11:58349600-58354800	Weak transcription	Brain Substantia Nigra	brain
48	chr11:58349600-58360000	Weak transcription	Fetal Intestine Small	intestine
49	chr11:58349600-58360000	Weak transcription	Thymus	Thymus
50	chr11:58349600-58360200	Weak transcription	Fetal Heart	heart

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