Variant report

Variant	rs73487770
Chromosome Location	chr11:58318465-58318466
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:58313234..58315538-chr11:58317214..58319638,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs58433279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58454093	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59856964	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470722	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470723	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470731	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470732	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470748	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470749	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470751	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470756	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470758	0.85[AMR][1000 genomes]
rs73472048	0.83[AMR][1000 genomes]
rs73485922	0.85[AMR][1000 genomes]
rs73485926	0.85[AMR][1000 genomes]
rs73485934	0.85[AMR][1000 genomes]
rs73485945	1.00[AMR][1000 genomes]
rs73487714	1.00[AMR][1000 genomes]
rs73487735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73487737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58292200-58327400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:58299800-58320000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:58300000-58340600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:58300600-58338600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:58306000-58322400	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr11:58308200-58324000	Weak transcription	NH-A	brain
7	chr11:58309000-58336200	Weak transcription	NHEK	skin
8	chr11:58309400-58323400	Weak transcription	HUVEC	blood vessel
9	chr11:58309600-58338800	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr11:58309800-58322600	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr11:58310000-58330000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr11:58310200-58322400	Strong transcription	Primary B cells from peripheral blood	blood
13	chr11:58310200-58322400	Strong transcription	Liver	Liver
14	chr11:58310200-58322600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:58310200-58322800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr11:58310400-58322400	Strong transcription	Adipose Nuclei	Adipose
17	chr11:58310400-58322400	Strong transcription	Duodenum Mucosa	Duodenum
18	chr11:58310400-58322600	Strong transcription	Primary B cells from cord blood	blood
19	chr11:58310400-58322600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr11:58310400-58322600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr11:58310400-58322600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr11:58310400-58322600	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr11:58310400-58322800	Strong transcription	Fetal Thymus	thymus
24	chr11:58310400-58322800	Strong transcription	GM12878-XiMat	blood
25	chr11:58310600-58322400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr11:58310600-58322400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr11:58310600-58322600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr11:58310600-58331000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr11:58311400-58320200	Strong transcription	Colon Smooth Muscle	Colon
30	chr11:58311600-58319000	Strong transcription	HSMM	muscle
31	chr11:58311600-58322400	Strong transcription	Duodenum Smooth Muscle	Duodenum
32	chr11:58311800-58322400	Strong transcription	Thymus	Thymus
33	chr11:58311800-58322800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
34	chr11:58312000-58323000	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr11:58312200-58322000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr11:58312200-58322000	Strong transcription	Brain Anterior Caudate	brain
37	chr11:58312400-58322400	Strong transcription	Fetal Intestine Large	intestine
38	chr11:58312600-58322200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr11:58312600-58322200	Strong transcription	Skeletal Muscle Female	skeletal muscle
40	chr11:58312600-58322400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr11:58312600-58322400	Strong transcription	Rectal Mucosa Donor 31	rectum
42	chr11:58312600-58322400	Strong transcription	Stomach Smooth Muscle	stomach
43	chr11:58312800-58320000	Strong transcription	Muscle Satellite Cultured Cells	--
44	chr11:58312800-58322800	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr11:58312800-58323200	Strong transcription	Primary T cells from cord blood	blood
46	chr11:58313000-58322600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr11:58313400-58322400	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr11:58313400-58322400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr11:58313800-58319600	Strong transcription	Osteobl	bone
50	chr11:58313800-58322400	Strong transcription	NHDF-Ad	bronchial

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