Variant report

Variant	rs73470713
Chromosome Location	chr11:58330695-58330696
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:58329222..58332135-chr11:58345391..58347279,2	MCF-7	breast:
2	chr11:58321414..58324163-chr11:58328599..58331091,2	K562	blood:

Variant related genes	Relation type
ENSG00000186660	Chromatin interaction
ENSG00000255073	Chromatin interaction
ENSG00000110031	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs58433279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58454093	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59856964	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470722	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470723	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470731	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470732	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470748	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470749	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470751	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470756	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470758	0.85[AMR][1000 genomes]
rs73472048	0.83[AMR][1000 genomes]
rs73485922	0.85[AMR][1000 genomes]
rs73485926	0.85[AMR][1000 genomes]
rs73485934	0.85[AMR][1000 genomes]
rs73485945	1.00[AMR][1000 genomes]
rs73487714	1.00[AMR][1000 genomes]
rs73487735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73487737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73487770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58300000-58340600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr11:58300600-58338600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:58309000-58336200	Weak transcription	NHEK	skin
4	chr11:58309600-58338800	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr11:58310600-58331000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:58315600-58340400	Weak transcription	Stomach Mucosa	stomach
7	chr11:58318200-58336400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:58318400-58341000	Weak transcription	Right Ventricle	heart
9	chr11:58318400-58344800	Weak transcription	Fetal Brain Male	brain
10	chr11:58318600-58344400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr11:58318800-58332000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:58318800-58336800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:58318800-58340600	Weak transcription	NHLF	lung
14	chr11:58318800-58341400	Weak transcription	Psoas Muscle	Psoas
15	chr11:58319200-58343000	Weak transcription	Fetal Brain Female	brain
16	chr11:58320000-58341000	Weak transcription	HSMMtube	muscle
17	chr11:58320200-58340800	Weak transcription	Colon Smooth Muscle	Colon
18	chr11:58320600-58338200	Weak transcription	HMEC	breast
19	chr11:58321600-58336400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr11:58321600-58337200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr11:58321600-58340400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:58321800-58340400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:58321800-58341200	Weak transcription	Colonic Mucosa	Colon
24	chr11:58321800-58345000	Weak transcription	Ovary	ovary
25	chr11:58322000-58336400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:58322200-58332400	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr11:58322200-58336400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr11:58322200-58337000	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr11:58322400-58332400	Weak transcription	Fetal Stomach	stomach
30	chr11:58322400-58335000	Weak transcription	Dnd41	blood
31	chr11:58322400-58336200	Weak transcription	Placenta	Placenta
32	chr11:58322400-58336400	Weak transcription	Fetal Muscle Leg	muscle
33	chr11:58322400-58336800	Weak transcription	Spleen	Spleen
34	chr11:58322400-58344200	Weak transcription	Fetal Lung	lung
35	chr11:58324400-58336000	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr11:58326400-58331600	Strong transcription	Primary B cells from cord blood	blood
37	chr11:58327000-58332400	Enhancers	Fetal Intestine Small	intestine
38	chr11:58327200-58332400	Enhancers	Fetal Intestine Large	intestine
39	chr11:58327200-58336400	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
40	chr11:58328000-58330800	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr11:58328000-58331000	Enhancers	HepG2	liver
42	chr11:58328600-58331400	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr11:58328600-58332800	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr11:58328800-58331000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr11:58328800-58331800	Genic enhancers	GM12878-XiMat	blood
46	chr11:58328800-58333000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
47	chr11:58329000-58330800	Enhancers	Liver	Liver
48	chr11:58329000-58330800	Genic enhancers	Duodenum Mucosa	Duodenum
49	chr11:58329000-58331600	Strong transcription	Stomach Smooth Muscle	stomach
50	chr11:58329000-58332800	Genic enhancers	Primary T helper naive cells from peripheral blood	blood

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