Variant report

Variant	rs73470751
Chromosome Location	chr11:58402779-58402780
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:58402145..58403700-chr11:58406157..58408220,2	K562	blood:
2	chr11:58344369..58347020-chr11:58402658..58405186,3	K562	blood:
3	chr11:58397520..58400716-chr11:58402056..58406653,5	K562	blood:
4	chr11:58309862..58312416-chr11:58401344..58403309,2	K562	blood:

Variant related genes	Relation type
ENSG00000255073	Chromatin interaction
ENSG00000186660	Chromatin interaction
ENSG00000110031	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs58433279	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58454093	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59856964	1.00[AMR][1000 genomes]
rs73470711	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470713	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470722	1.00[AMR][1000 genomes]
rs73470723	1.00[AMR][1000 genomes]
rs73470726	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470758	0.85[AMR][1000 genomes]
rs73472048	0.83[AMR][1000 genomes]
rs73485945	1.00[AMR][1000 genomes]
rs73487714	1.00[AMR][1000 genomes]
rs73487735	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73487737	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73487770	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832168	chr11:58394060-58564651	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58392000-58406000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:58393000-58407200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:58393200-58407000	Weak transcription	Thymus	Thymus
4	chr11:58393800-58406200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:58393800-58407800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr11:58394000-58407200	Weak transcription	Left Ventricle	heart
7	chr11:58394000-58407800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:58394600-58407200	Weak transcription	Primary T cells from cord blood	blood
9	chr11:58394600-58407200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr11:58394800-58407000	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr11:58394800-58408200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr11:58395200-58403600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr11:58395200-58407000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr11:58395200-58407000	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr11:58395600-58407200	Weak transcription	Dnd41	blood
16	chr11:58395800-58407800	Weak transcription	Fetal Thymus	thymus
17	chr11:58396200-58407000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:58400000-58403600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr11:58400000-58403600	Weak transcription	Pancreas	Pancrea
20	chr11:58401000-58402800	Weak transcription	Ovary	ovary
21	chr11:58402400-58407800	Weak transcription	Fetal Intestine Small	intestine

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