Variant report

Variant	rs73485945
Chromosome Location	chr11:58190414-58190415
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs58028384	0.81[AFR][1000 genomes]
rs58433279	1.00[AMR][1000 genomes]
rs58454093	1.00[AMR][1000 genomes]
rs59856964	1.00[AMR][1000 genomes]
rs60604857	0.81[AFR][1000 genomes]
rs73470711	1.00[AMR][1000 genomes]
rs73470713	1.00[AMR][1000 genomes]
rs73470722	1.00[AMR][1000 genomes]
rs73470723	1.00[AMR][1000 genomes]
rs73470726	1.00[AMR][1000 genomes]
rs73470731	1.00[AMR][1000 genomes]
rs73470732	1.00[AMR][1000 genomes]
rs73470748	1.00[AMR][1000 genomes]
rs73470749	1.00[AMR][1000 genomes]
rs73470751	1.00[AMR][1000 genomes]
rs73470756	1.00[AMR][1000 genomes]
rs73470758	0.85[AMR][1000 genomes]
rs73484122	0.86[AFR][1000 genomes]
rs73484175	0.81[AFR][1000 genomes]
rs73484181	0.81[AFR][1000 genomes]
rs73484194	0.81[AFR][1000 genomes]
rs73485922	0.85[AMR][1000 genomes]
rs73485926	0.85[AMR][1000 genomes]
rs73485934	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73487714	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73487735	1.00[AMR][1000 genomes]
rs73487737	1.00[AMR][1000 genomes]
rs73487770	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv517849	chr11:58129053-58264181	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv1042491	chr11:58134936-58263639	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58190200-58190600	Enhancers	Pancreas	Pancrea
2	chr11:58190200-58190600	Active TSS	Spleen	Spleen

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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