Variant report
| Variant | rs73485934 |
|---|---|
| Chromosome Location | chr11:58171189-58171190 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | FOS | chr11:58171118-58171215 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| OR5B3 | TF binding region |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs58433279 | 0.85[AMR][1000 genomes] |
| rs58454093 | 0.85[AMR][1000 genomes] |
| rs59856964 | 0.85[AMR][1000 genomes] |
| rs73470711 | 0.85[AMR][1000 genomes] |
| rs73470713 | 0.85[AMR][1000 genomes] |
| rs73470722 | 0.85[AMR][1000 genomes] |
| rs73470723 | 0.85[AMR][1000 genomes] |
| rs73470726 | 0.85[AMR][1000 genomes] |
| rs73470731 | 0.85[AMR][1000 genomes] |
| rs73470732 | 0.85[AMR][1000 genomes] |
| rs73470748 | 0.85[AMR][1000 genomes] |
| rs73470749 | 0.85[AMR][1000 genomes] |
| rs73484129 | 0.88[AFR][1000 genomes] |
| rs73484175 | 1.00[AFR][1000 genomes] |
| rs73484181 | 1.00[AFR][1000 genomes] |
| rs73484194 | 1.00[AFR][1000 genomes] |
| rs73485922 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73485926 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73485945 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs73487714 | 0.85[AMR][1000 genomes] |
| rs73487735 | 0.85[AMR][1000 genomes] |
| rs73487737 | 0.85[AMR][1000 genomes] |
| rs73487770 | 0.85[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1054205 | chr11:57544264-58358509 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 67 gene(s) | inside rSNPs | diseases |
| 2 | nsv517849 | chr11:58129053-58264181 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv1042491 | chr11:58134936-58263639 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv1037213 | chr11:58142913-58178810 | Enhancers ZNF genes & repeats Weak transcription | TF binding regionCpG island | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
