Variant report

Variant	rs73470731
Chromosome Location	chr11:58362795-58362796
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs58433279	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58454093	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59856964	1.00[AMR][1000 genomes]
rs73470711	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470713	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470722	1.00[AMR][1000 genomes]
rs73470723	1.00[AMR][1000 genomes]
rs73470726	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73470758	0.85[AMR][1000 genomes]
rs73472048	0.83[AMR][1000 genomes]
rs73485922	0.85[AMR][1000 genomes]
rs73485926	0.85[AMR][1000 genomes]
rs73485934	0.85[AMR][1000 genomes]
rs73485945	1.00[AMR][1000 genomes]
rs73487714	1.00[AMR][1000 genomes]
rs73487735	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73487737	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73487770	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58347600-58379600	Weak transcription	Pancreas	Pancrea
2	chr11:58347600-58379800	Weak transcription	Lung	lung
3	chr11:58347600-58380200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:58347800-58377200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr11:58347800-58380200	Weak transcription	Aorta	Aorta
6	chr11:58348200-58377400	Weak transcription	Fetal Kidney	kidney
7	chr11:58349200-58363200	Weak transcription	Brain Germinal Matrix	brain
8	chr11:58349200-58377400	Weak transcription	HSMMtube	muscle
9	chr11:58349200-58379600	Weak transcription	Spleen	Spleen
10	chr11:58349200-58380600	Weak transcription	Fetal Brain Male	brain
11	chr11:58349200-58384200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:58349200-58384800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:58349400-58367600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr11:58349600-58364200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr11:58349600-58368200	Weak transcription	Brain Anterior Caudate	brain
16	chr11:58351000-58367800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr11:58351200-58378200	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr11:58352000-58368400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:58352600-58379600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:58353400-58367600	Weak transcription	Hela-S3	cervix
21	chr11:58353600-58364400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr11:58354200-58364400	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr11:58354600-58377400	Weak transcription	Fetal Brain Female	brain
24	chr11:58354800-58376800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr11:58355000-58363200	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr11:58355000-58366800	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr11:58355000-58367000	Weak transcription	Primary hematopoietic stem cells	blood
28	chr11:58355000-58377200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr11:58355000-58377200	Weak transcription	NH-A	brain
30	chr11:58355600-58368000	Weak transcription	Brain Angular Gyrus	brain
31	chr11:58357200-58377200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:58357800-58365000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr11:58358600-58364400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:58359200-58363400	Enhancers	Duodenum Mucosa	Duodenum
35	chr11:58359400-58366400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr11:58360200-58362800	Weak transcription	Primary T cells from cord blood	blood
37	chr11:58360200-58363000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr11:58360200-58364400	Weak transcription	Colonic Mucosa	Colon
39	chr11:58360400-58363000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr11:58360400-58363200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr11:58360400-58363400	Enhancers	Fetal Intestine Large	intestine
42	chr11:58360400-58367200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr11:58360400-58370200	Weak transcription	NHEK	skin
44	chr11:58360400-58377200	Weak transcription	Osteobl	bone
45	chr11:58360400-58379600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr11:58360600-58363000	Weak transcription	Left Ventricle	heart
47	chr11:58360600-58363200	Weak transcription	Right Atrium	heart
48	chr11:58360600-58370200	Weak transcription	Right Ventricle	heart
49	chr11:58360600-58370800	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr11:58360600-58372600	Weak transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links