Variant report

Variant	rs7908064
Chromosome Location	chr10:61346502-61346503
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10733987	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10763611	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17774253	1.00[CEU][hapmap]
rs1875150	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1909625	0.84[EUR][1000 genomes]
rs1909631	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1909634	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1909636	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1909637	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1909640	1.00[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs1909641	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4421701	0.82[EUR][1000 genomes]
rs4948335	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4948337	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4948340	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6481469	0.82[EUR][1000 genomes]
rs7900692	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7911814	1.00[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61340200-61347200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:61340200-61349400	Weak transcription	Fetal Stomach	stomach
3	chr10:61343000-61347000	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:61343800-61346800	Enhancers	Rectal Smooth Muscle	rectum
5	chr10:61345400-61347800	Enhancers	Esophagus	oesophagus
6	chr10:61345400-61348000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:61345400-61348400	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr10:61345600-61346600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:61345600-61346600	Weak transcription	HMEC	breast
10	chr10:61345600-61346800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:61345600-61346800	Weak transcription	Brain Angular Gyrus	brain
12	chr10:61345600-61349200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:61345600-61353400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr10:61346000-61347000	Weak transcription	Colon Smooth Muscle	Colon
15	chr10:61346000-61347400	Weak transcription	Brain Anterior Caudate	brain
16	chr10:61346000-61347800	Enhancers	NHEK	skin
17	chr10:61346200-61347400	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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