Variant report

Variant	rs4948337
Chromosome Location	chr10:61340114-61340115
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:61332918..61334524-chr10:61339419..61341493,2	K562	blood:
2	chr10:61000444..61001116-chr10:61339756..61340500,2	MCF-7	breast:
3	chr10:61332918..61335616-chr10:61339810..61341493,2	K562	blood:
4	chr10:61000090..61001706-chr10:61339064..61340660,11	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10128472	0.91[EUR][1000 genomes]
rs10733987	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10763611	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11006591	0.90[EUR][1000 genomes]
rs11006596	0.90[EUR][1000 genomes]
rs11006601	0.91[EUR][1000 genomes]
rs12354454	0.91[EUR][1000 genomes]
rs12355623	0.91[EUR][1000 genomes]
rs17774253	0.93[CEU][hapmap];0.90[EUR][1000 genomes]
rs1875148	0.83[ASN][1000 genomes]
rs1875150	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1909624	0.83[ASN][1000 genomes]
rs1909625	0.94[EUR][1000 genomes]
rs1909626	0.83[ASN][1000 genomes]
rs1909627	0.86[ASN][1000 genomes]
rs1909629	0.86[ASN][1000 genomes]
rs1909631	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1909634	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1909636	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1909637	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1909640	1.00[CEU][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1909641	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2126775	0.83[ASN][1000 genomes]
rs2169686	0.83[ASN][1000 genomes]
rs34414463	0.82[EUR][1000 genomes]
rs34473910	0.90[EUR][1000 genomes]
rs34777137	0.91[EUR][1000 genomes]
rs35237633	0.90[EUR][1000 genomes]
rs35244321	0.90[EUR][1000 genomes]
rs35620829	0.90[EUR][1000 genomes]
rs35652472	0.90[EUR][1000 genomes]
rs36014643	0.87[EUR][1000 genomes]
rs4421701	0.93[EUR][1000 genomes]
rs4423134	0.93[EUR][1000 genomes]
rs4948335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4948336	0.86[ASN][1000 genomes]
rs4948340	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4948341	0.83[ASN][1000 genomes]
rs6481469	0.93[EUR][1000 genomes]
rs67956419	0.91[EUR][1000 genomes]
rs7900692	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7901109	0.86[ASN][1000 genomes]
rs7905991	0.83[ASN][1000 genomes]
rs7908064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7909725	0.83[ASN][1000 genomes]
rs7911814	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61338400-61340200	Enhancers	Fetal Stomach	stomach
2	chr10:61338600-61340200	Enhancers	Rectal Smooth Muscle	rectum
3	chr10:61339000-61341600	Enhancers	Duodenum Smooth Muscle	Duodenum
4	chr10:61339600-61340200	Enhancers	Brain Hippocampus Middle	brain
5	chr10:61339600-61340200	Enhancers	Fetal Muscle Leg	muscle
6	chr10:61339800-61340200	Enhancers	Brain Angular Gyrus	brain
7	chr10:61339800-61340200	Flanking Active TSS	Brain Anterior Caudate	brain
8	chr10:61339800-61340200	Flanking Active TSS	Brain Cingulate Gyrus	brain
9	chr10:61339800-61340200	Enhancers	Fetal Lung	lung
10	chr10:61339800-61340200	Enhancers	Ovary	ovary
11	chr10:61340000-61340200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:61340000-61340200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr10:61340000-61340200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr10:61340000-61341000	Weak transcription	Colon Smooth Muscle	Colon
15	chr10:61340000-61341600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:61340000-61341800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr10:61340000-61341800	Weak transcription	Brain Substantia Nigra	brain
18	chr10:61340000-61342600	Weak transcription	Brain Inferior Temporal Lobe	brain

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