Variant report
| Variant | rs7909725 |
|---|---|
| Chromosome Location | chr10:61356013-61356014 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10128218 | 0.81[ASN][1000 genomes] |
| rs10733987 | 0.83[ASN][1000 genomes] |
| rs10763611 | 0.85[ASN][1000 genomes] |
| rs1875148 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1875150 | 0.85[ASN][1000 genomes] |
| rs1909624 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1909626 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1909627 | 1.00[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1909629 | 1.00[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1909631 | 0.85[ASN][1000 genomes] |
| rs1909634 | 0.85[ASN][1000 genomes] |
| rs1909636 | 0.85[ASN][1000 genomes] |
| rs1909637 | 1.00[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1909640 | 0.85[ASN][1000 genomes] |
| rs1909641 | 0.97[ASN][1000 genomes] |
| rs2126775 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2169686 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3999577 | 0.91[ASN][1000 genomes] |
| rs4948234 | 0.91[ASN][1000 genomes] |
| rs4948335 | 0.85[ASN][1000 genomes] |
| rs4948336 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4948337 | 0.83[ASN][1000 genomes] |
| rs4948340 | 0.89[ASN][1000 genomes] |
| rs4948341 | 1.00[ASN][1000 genomes] |
| rs4948342 | 0.85[ASN][1000 genomes] |
| rs6481470 | 0.94[ASN][1000 genomes] |
| rs7097223 | 0.86[ASN][1000 genomes] |
| rs7098214 | 0.85[ASN][1000 genomes] |
| rs7900692 | 0.97[ASN][1000 genomes] |
| rs7901109 | 0.97[ASN][1000 genomes] |
| rs7905405 | 0.85[ASN][1000 genomes] |
| rs7905991 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7911814 | 1.00[AMR][1000 genomes];0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv895565 | chr10:61347537-61379398 | Weak transcription Enhancers Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv895566 | chr10:61350192-61379398 | Weak transcription Enhancers Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv437684 | chr10:61354446-61367720 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv437683 | chr10:61354446-61369980 | Weak transcription Enhancers Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:61355200-61356400 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
| 2 | chr10:61355600-61366800 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
