Variant report
| Variant | rs3999577 |
|---|---|
| Chromosome Location | chr10:61376820-61376821 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10128218 | 0.84[ASN][1000 genomes] |
| rs1875148 | 0.85[ASN][1000 genomes] |
| rs1909624 | 0.91[ASN][1000 genomes] |
| rs1909626 | 0.91[ASN][1000 genomes] |
| rs1909627 | 0.88[ASN][1000 genomes] |
| rs1909629 | 0.88[ASN][1000 genomes] |
| rs1909637 | 0.88[ASN][1000 genomes] |
| rs1909641 | 0.88[ASN][1000 genomes] |
| rs2126775 | 0.91[ASN][1000 genomes] |
| rs2169686 | 0.91[ASN][1000 genomes] |
| rs4948234 | 1.00[ASN][1000 genomes] |
| rs4948336 | 0.88[ASN][1000 genomes] |
| rs4948340 | 0.81[ASN][1000 genomes] |
| rs4948341 | 0.91[ASN][1000 genomes] |
| rs4948342 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6481470 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7097223 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7098214 | 0.94[ASN][1000 genomes] |
| rs7900692 | 0.88[ASN][1000 genomes] |
| rs7901109 | 0.88[ASN][1000 genomes] |
| rs7905405 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7905991 | 0.91[ASN][1000 genomes] |
| rs7909725 | 0.91[ASN][1000 genomes] |
| rs7911814 | 0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv895565 | chr10:61347537-61379398 | Weak transcription Enhancers Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv895566 | chr10:61350192-61379398 | Weak transcription Enhancers Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv467290 | chr10:61358382-61378404 | Flanking Active TSS Enhancers Weak transcription Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv467291 | chr10:61358382-61378404 | Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv551151 | chr10:61358382-61378404 | Weak transcription Flanking Active TSS Enhancers Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:61374200-61377600 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
