Variant report

Variant	rs2169686
Chromosome Location	chr10:61366844-61366845
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61363138..61365267-chr10:61366701..61368651,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10128218	0.81[ASN][1000 genomes]
rs10733987	0.83[ASN][1000 genomes]
rs10763611	0.85[ASN][1000 genomes]
rs1875148	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1875150	0.85[ASN][1000 genomes]
rs1909624	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909626	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1909627	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1909629	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1909631	0.85[ASN][1000 genomes]
rs1909634	0.85[ASN][1000 genomes]
rs1909636	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1909637	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1909640	0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs1909641	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2126775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3999577	0.91[ASN][1000 genomes]
rs4948234	0.91[ASN][1000 genomes]
rs4948335	0.85[ASN][1000 genomes]
rs4948336	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4948337	0.83[ASN][1000 genomes]
rs4948340	0.89[ASN][1000 genomes]
rs4948341	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4948342	0.85[ASN][1000 genomes]
rs6481470	0.94[ASN][1000 genomes]
rs7097223	0.86[ASN][1000 genomes]
rs7098214	0.85[ASN][1000 genomes]
rs7900692	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7901109	0.97[ASN][1000 genomes]
rs7905405	0.85[ASN][1000 genomes]
rs7905991	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908064	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7909725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911814	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895565	chr10:61347537-61379398	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv895566	chr10:61350192-61379398	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv437684	chr10:61354446-61367720	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv437683	chr10:61354446-61369980	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1049492	chr10:61357609-61368880	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv437118	chr10:61358382-61372357	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv437119	chr10:61358382-61372357	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv467290	chr10:61358382-61378404	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv467291	chr10:61358382-61378404	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv551151	chr10:61358382-61378404	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	esv3318118	chr10:61362046-61366944	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv1814710	chr10:61362321-61367131	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3325439	chr10:61364571-61367119	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61362000-61368600	Weak transcription	Placenta	Placenta
2	chr10:61366000-61367000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:61366000-61367000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:61366000-61367400	Enhancers	Brain Germinal Matrix	brain
5	chr10:61366200-61367000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:61366200-61367000	Enhancers	Hela-S3	cervix
7	chr10:61366200-61369000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:61366400-61368400	Enhancers	Fetal Intestine Large	intestine
9	chr10:61366600-61367200	Weak transcription	Fetal Brain Male	brain
10	chr10:61366600-61367200	Weak transcription	Fetal Intestine Small	intestine
11	chr10:61366800-61367200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr10:61366800-61367800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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