Variant report

Variant	rs1909640
Chromosome Location	chr10:61334461-61334462
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:61332918..61334524-chr10:61339419..61341493,2	K562	blood:
2	chr1:202087896..202088746-chr10:61334432..61335080,2	MCF-7	breast:
3	chr10:61332918..61335616-chr10:61339810..61341493,2	K562	blood:
4	chr10:61333788..61336160-chr10:61346391..61349276,2	K562	blood:

Variant related genes	Relation type
ENSG00000235140	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10128472	0.90[EUR][1000 genomes]
rs10733987	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10763611	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006591	0.88[EUR][1000 genomes]
rs11006596	0.88[EUR][1000 genomes]
rs11006601	0.90[EUR][1000 genomes]
rs12354454	0.90[EUR][1000 genomes]
rs12355623	0.93[EUR][1000 genomes]
rs17774253	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs1875148	0.85[ASN][1000 genomes]
rs1875150	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909624	0.85[ASN][1000 genomes]
rs1909625	0.93[EUR][1000 genomes]
rs1909626	0.85[ASN][1000 genomes]
rs1909627	0.88[ASN][1000 genomes]
rs1909629	0.88[ASN][1000 genomes]
rs1909631	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909634	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909636	1.00[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909637	0.88[ASN][1000 genomes]
rs1909641	0.88[ASN][1000 genomes]
rs2126775	0.85[ASN][1000 genomes]
rs2169686	0.85[ASN][1000 genomes]
rs34414463	0.81[EUR][1000 genomes]
rs34473910	0.88[EUR][1000 genomes]
rs34777137	0.93[EUR][1000 genomes]
rs35237633	0.91[EUR][1000 genomes]
rs35244321	0.88[EUR][1000 genomes]
rs35620829	0.91[EUR][1000 genomes]
rs35652472	0.88[EUR][1000 genomes]
rs36014643	0.88[EUR][1000 genomes]
rs4421701	0.92[EUR][1000 genomes]
rs4423134	0.91[EUR][1000 genomes]
rs4948335	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948336	0.88[ASN][1000 genomes]
rs4948337	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4948340	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4948341	0.85[ASN][1000 genomes]
rs6481469	0.92[EUR][1000 genomes]
rs6481470	0.80[ASN][1000 genomes]
rs67956419	0.93[EUR][1000 genomes]
rs7900692	0.88[ASN][1000 genomes]
rs7901109	0.88[ASN][1000 genomes]
rs7905991	0.85[ASN][1000 genomes]
rs7908064	1.00[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs7909725	0.85[ASN][1000 genomes]
rs7911814	0.82[JPT][hapmap];0.88[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61331400-61336200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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