Variant report

Variant	rs11006601
Chromosome Location	chr10:61372357-61372358
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10128472	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509111	1.00[ASN][1000 genomes]
rs10733987	0.91[EUR][1000 genomes]
rs10763611	0.89[EUR][1000 genomes]
rs10826333	1.00[ASN][1000 genomes]
rs10826334	1.00[ASN][1000 genomes]
rs11006591	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006596	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12354454	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12355623	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12358070	1.00[ASN][1000 genomes]
rs17774253	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1875150	0.91[EUR][1000 genomes]
rs1909625	0.86[EUR][1000 genomes]
rs1909631	0.89[EUR][1000 genomes]
rs1909634	0.89[EUR][1000 genomes]
rs1909636	0.92[CEU][hapmap];0.95[GIH][hapmap];0.89[EUR][1000 genomes]
rs1909640	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs34414463	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34473910	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34777137	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35237633	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35244321	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35620829	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35652472	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36014643	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4421701	0.87[EUR][1000 genomes]
rs4423134	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948335	0.91[EUR][1000 genomes]
rs4948337	0.91[EUR][1000 genomes]
rs4948340	0.90[EUR][1000 genomes]
rs6481469	0.87[EUR][1000 genomes]
rs67956419	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908064	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895565	chr10:61347537-61379398	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv895566	chr10:61350192-61379398	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv437118	chr10:61358382-61372357	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv437119	chr10:61358382-61372357	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv467290	chr10:61358382-61378404	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv467291	chr10:61358382-61378404	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv551151	chr10:61358382-61378404	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61368800-61373000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr10:61369000-61373800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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