Variant report

Variant	rs4948335
Chromosome Location	chr10:61339980-61339981
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:61332918..61334524-chr10:61339419..61341493,2	K562	blood:
2	chr10:61000444..61001116-chr10:61339756..61340500,2	MCF-7	breast:
3	chr10:61332918..61335616-chr10:61339810..61341493,2	K562	blood:
4	chr10:61000090..61001706-chr10:61339064..61340660,11	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10128472	0.91[EUR][1000 genomes]
rs10733987	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10763611	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006591	0.90[EUR][1000 genomes]
rs11006596	0.90[EUR][1000 genomes]
rs11006601	0.91[EUR][1000 genomes]
rs12354454	0.91[EUR][1000 genomes]
rs12355623	0.91[EUR][1000 genomes]
rs17774253	0.90[EUR][1000 genomes]
rs1875148	0.85[ASN][1000 genomes]
rs1875150	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909624	0.85[ASN][1000 genomes]
rs1909625	0.94[EUR][1000 genomes]
rs1909626	0.85[ASN][1000 genomes]
rs1909627	0.88[ASN][1000 genomes]
rs1909629	0.88[ASN][1000 genomes]
rs1909631	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909634	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909636	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909637	0.88[ASN][1000 genomes]
rs1909640	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909641	0.88[ASN][1000 genomes]
rs2126775	0.85[ASN][1000 genomes]
rs2169686	0.85[ASN][1000 genomes]
rs34414463	0.82[EUR][1000 genomes]
rs34473910	0.90[EUR][1000 genomes]
rs34777137	0.91[EUR][1000 genomes]
rs35237633	0.90[EUR][1000 genomes]
rs35244321	0.90[EUR][1000 genomes]
rs35620829	0.90[EUR][1000 genomes]
rs35652472	0.90[EUR][1000 genomes]
rs36014643	0.87[EUR][1000 genomes]
rs4421701	0.93[EUR][1000 genomes]
rs4423134	0.93[EUR][1000 genomes]
rs4948336	0.88[ASN][1000 genomes]
rs4948337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4948340	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4948341	0.85[ASN][1000 genomes]
rs6481469	0.93[EUR][1000 genomes]
rs6481470	0.80[ASN][1000 genomes]
rs67956419	0.91[EUR][1000 genomes]
rs7900692	0.88[ASN][1000 genomes]
rs7901109	0.88[ASN][1000 genomes]
rs7905991	0.85[ASN][1000 genomes]
rs7908064	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7909725	0.85[ASN][1000 genomes]
rs7911814	0.88[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61338400-61340200	Enhancers	Fetal Stomach	stomach
2	chr10:61338600-61340200	Enhancers	Rectal Smooth Muscle	rectum
3	chr10:61339000-61341600	Enhancers	Duodenum Smooth Muscle	Duodenum
4	chr10:61339400-61340000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:61339400-61340000	Enhancers	Stomach Smooth Muscle	stomach
6	chr10:61339600-61340000	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr10:61339600-61340000	Enhancers	Brain Substantia Nigra	brain
8	chr10:61339600-61340000	Enhancers	Colon Smooth Muscle	Colon
9	chr10:61339600-61340200	Enhancers	Brain Hippocampus Middle	brain
10	chr10:61339600-61340200	Enhancers	Fetal Muscle Leg	muscle
11	chr10:61339800-61340000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr10:61339800-61340000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr10:61339800-61340200	Enhancers	Brain Angular Gyrus	brain
14	chr10:61339800-61340200	Flanking Active TSS	Brain Anterior Caudate	brain
15	chr10:61339800-61340200	Flanking Active TSS	Brain Cingulate Gyrus	brain
16	chr10:61339800-61340200	Enhancers	Fetal Lung	lung
17	chr10:61339800-61340200	Enhancers	Ovary	ovary

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