Variant report

Variant	rs1909627
Chromosome Location	chr10:61352800-61352801
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10733987	0.86[ASN][1000 genomes]
rs10763611	0.88[ASN][1000 genomes]
rs16914022	1.00[MEX][hapmap]
rs16914038	1.00[MEX][hapmap]
rs1875148	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1875150	0.88[ASN][1000 genomes]
rs1909624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1909626	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1909629	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909631	0.88[ASN][1000 genomes]
rs1909634	0.88[ASN][1000 genomes]
rs1909636	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1909637	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909640	0.88[ASN][1000 genomes]
rs1909641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2126775	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2169686	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3999577	0.88[ASN][1000 genomes]
rs4948234	0.88[ASN][1000 genomes]
rs4948335	0.88[ASN][1000 genomes]
rs4948336	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948337	0.86[ASN][1000 genomes]
rs4948340	0.86[ASN][1000 genomes]
rs4948341	0.97[ASN][1000 genomes]
rs4948342	0.82[ASN][1000 genomes]
rs6481470	0.91[ASN][1000 genomes]
rs7073222	1.00[MEX][hapmap]
rs7097223	0.83[ASN][1000 genomes]
rs7098214	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7900692	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7901109	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7905405	0.82[ASN][1000 genomes]
rs7905991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7908064	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7909725	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7911814	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7917618	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895565	chr10:61347537-61379398	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv895566	chr10:61350192-61379398	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61345600-61353400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:61351800-61352800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:61352600-61352800	Enhancers	Pancreas	Pancrea
4	chr10:61352800-61354400	Enhancers	Rectal Mucosa Donor 31	rectum

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