Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10128218	0.84[ASN][1000 genomes]
rs1875148	0.85[ASN][1000 genomes]
rs1909624	0.91[ASN][1000 genomes]
rs1909626	0.91[ASN][1000 genomes]
rs1909627	0.88[ASN][1000 genomes]
rs1909629	0.88[ASN][1000 genomes]
rs1909636	1.00[JPT][hapmap]
rs1909637	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1909641	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2126775	0.91[ASN][1000 genomes]
rs2169686	0.91[ASN][1000 genomes]
rs3999577	1.00[ASN][1000 genomes]
rs4948336	0.88[ASN][1000 genomes]
rs4948340	0.81[ASN][1000 genomes]
rs4948341	0.91[ASN][1000 genomes]
rs4948342	0.94[ASN][1000 genomes]
rs6481470	0.98[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7097223	0.89[ASN][1000 genomes]
rs7098214	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7900692	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7901109	0.88[ASN][1000 genomes]
rs7905405	0.94[ASN][1000 genomes]
rs7905991	0.91[ASN][1000 genomes]
rs7908064	1.00[JPT][hapmap]
rs7909725	0.91[ASN][1000 genomes]
rs7911814	1.00[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895565	chr10:61347537-61379398	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv895566	chr10:61350192-61379398	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv467290	chr10:61358382-61378404	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv467291	chr10:61358382-61378404	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv551151	chr10:61358382-61378404	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61377400-61379000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr10:61377600-61378600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:61377800-61378600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr10:61377800-61378600	Enhancers	Rectal Smooth Muscle	rectum
5	chr10:61378000-61378600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:61378000-61378600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:61378000-61378800	Enhancers	Brain Anterior Caudate	brain
8	chr10:61378000-61379600	Enhancers	Ovary	ovary

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