Variant report

Variant	rs1909637
Chromosome Location	chr10:61346942-61346943
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr10:61346916-61347321	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT3	chr10:61346915-61347222	MCF10A-Er-Src	breast:	n/a	n/a
3	STAT3	chr10:61346929-61347188	MCF10A-Er-Src	breast:	n/a	n/a
4	MYC	chr10:61346913-61347170	MCF10A-Er-Src	breast:	n/a	n/a
5	FOS	chr10:61346913-61347311	MCF10A-Er-Src	breast:	n/a	n/a
6	FOS	chr10:61346885-61347317	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000235140	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10733987	0.86[ASN][1000 genomes]
rs10763611	0.88[ASN][1000 genomes]
rs10993995	1.00[LWK][hapmap]
rs16914022	1.00[MEX][hapmap]
rs16914038	1.00[MEX][hapmap]
rs1875148	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1875150	0.88[ASN][1000 genomes]
rs1909624	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1909626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1909627	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909631	0.88[ASN][1000 genomes]
rs1909634	0.88[ASN][1000 genomes]
rs1909636	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1909640	0.88[ASN][1000 genomes]
rs1909641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2126775	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2169686	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3999577	0.88[ASN][1000 genomes]
rs4948234	0.88[ASN][1000 genomes]
rs4948335	0.88[ASN][1000 genomes]
rs4948336	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948337	0.86[ASN][1000 genomes]
rs4948340	0.86[ASN][1000 genomes]
rs4948341	0.97[ASN][1000 genomes]
rs4948342	0.82[ASN][1000 genomes]
rs6481470	0.91[ASN][1000 genomes]
rs7073222	1.00[MEX][hapmap]
rs7097223	0.83[ASN][1000 genomes]
rs7098214	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7900692	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7901109	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7905405	0.82[ASN][1000 genomes]
rs7905991	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7908064	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7909725	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7911814	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61340200-61347200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:61340200-61349400	Weak transcription	Fetal Stomach	stomach
3	chr10:61343000-61347000	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:61345400-61347800	Enhancers	Esophagus	oesophagus
5	chr10:61345400-61348000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:61345400-61348400	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr10:61345600-61349200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:61345600-61353400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr10:61346000-61347000	Weak transcription	Colon Smooth Muscle	Colon
10	chr10:61346000-61347400	Weak transcription	Brain Anterior Caudate	brain
11	chr10:61346000-61347800	Enhancers	NHEK	skin
12	chr10:61346200-61347400	Enhancers	Hela-S3	cervix
13	chr10:61346600-61347800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:61346600-61347800	Enhancers	HMEC	breast
15	chr10:61346600-61348000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr10:61346800-61347200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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